Wall clock time and date at job start Mon Mar 30 2020 02:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3 5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.01565 * 305.06698 * 6 5 4 8 8 C 1.54270 * 110.03278 * 66.45544 * 6 5 4 9 9 C 1.54888 * 104.19515 * 142.89766 * 8 6 5 10 10 C 1.54884 * 102.74825 * 322.05473 * 9 8 6 11 11 C 1.53875 * 110.03603 * 183.62115 * 6 5 4 12 12 H 1.09000 * 110.03278 * 121.42979 * 11 6 5 13 13 C 1.50695 * 110.03010 * 0.02562 * 11 6 5 14 14 H 1.08001 * 120.00014 * 359.97438 * 13 11 6 15 15 C 1.37875 * 120.00312 * 180.02562 * 13 11 6 16 16 N 1.31517 * 120.00580 * 179.97438 * 15 13 11 17 17 Si 1.86804 * 119.99705 * 359.97438 * 15 13 11 18 18 H 1.48497 * 109.46992 * 90.00361 * 17 15 13 19 19 H 1.48505 * 109.47173 * 210.00153 * 17 15 13 20 20 H 1.48501 * 109.47265 * 330.00298 * 17 15 13 21 21 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46227 * 299.99751 * 1 2 3 23 23 H 1.08996 * 109.47271 * 59.99107 * 1 2 3 24 24 H 1.09008 * 109.46731 * 240.00275 * 2 1 3 25 25 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47654 * 300.00659 * 3 2 1 27 27 H 1.09005 * 109.47243 * 60.00872 * 3 2 1 28 28 H 1.09001 * 109.46652 * 304.99694 * 4 2 1 29 29 H 1.08992 * 109.47514 * 184.99783 * 4 2 1 30 30 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 31 31 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 32 32 H 1.08999 * 110.48587 * 261.57474 * 8 6 5 33 33 H 1.08999 * 110.48476 * 24.21628 * 8 6 5 34 34 H 1.09000 * 110.75996 * 80.37311 * 9 8 6 35 35 H 1.09007 * 110.75236 * 203.55776 * 9 8 6 36 36 H 1.09006 * 110.48553 * 156.62419 * 10 9 8 37 37 H 1.09002 * 110.49254 * 279.13355 * 10 9 8 38 38 H 0.97000 * 120.00243 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 6 2.1448 -2.9168 2.4372 7 1 3.2199 -2.7696 2.5405 8 6 1.4160 -2.3850 3.6885 9 6 1.2273 -3.6379 4.5794 10 6 0.9108 -4.7474 3.5460 11 6 1.8236 -4.4189 2.3466 12 1 2.7429 -5.0016 2.4064 13 6 1.1067 -4.7165 1.0549 14 1 0.8951 -3.9185 0.3586 15 6 0.7201 -6.0072 0.7626 16 7 0.0940 -6.2669 -0.3645 17 14 1.0855 -7.3872 1.9674 18 1 -0.0470 -7.5276 2.9175 19 1 1.2675 -8.6592 1.2228 20 1 2.3265 -7.0720 2.7195 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 3.1301 1.4424 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6769 1.9563 0.8901 28 1 1.6055 -0.2618 2.1369 29 1 3.1264 -0.6445 1.2950 30 1 0.5489 -2.2724 1.1419 31 1 2.0698 -2.6550 0.3000 32 1 2.0283 -1.6421 4.1998 33 1 0.4493 -1.9616 3.4158 34 1 2.1436 -3.8667 5.1234 35 1 0.3946 -3.4996 5.2691 36 1 1.1544 -5.7288 3.9533 37 1 -0.1381 -4.7072 3.2521 38 1 -0.1777 -7.1750 -0.5703 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:32 Heat of formation + Delta-G solvation = -38.041858 kcal Electronic energy + Delta-G solvation = -14677.639076 eV Core-core repulsion = 12518.528354 eV Total energy + Delta-G solvation = -2159.110722 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.22617 -35.94077 -32.34595 -31.07762 -28.80249 -26.92839 -26.39693 -23.58404 -22.28461 -20.17872 -19.30421 -18.34792 -16.24656 -15.16277 -14.69244 -14.39008 -13.82168 -13.55327 -13.25687 -13.00697 -12.66389 -12.11657 -12.01629 -11.54152 -11.40888 -11.07598 -10.92738 -10.90386 -10.52021 -10.28107 -10.15296 -9.95778 -9.82652 -9.75654 -9.51373 -9.32998 -9.18427 -8.55437 -8.44016 -5.96705 -3.94171 3.34930 3.43701 3.46227 4.51338 5.15571 5.23784 5.30849 5.32121 5.53450 5.60635 5.64973 5.82677 5.89828 5.98123 6.08037 6.09972 6.21844 6.22226 6.34875 6.36033 6.46442 6.52321 6.55205 6.56785 6.59996 6.68162 6.75633 6.81411 7.03634 7.09605 7.21032 7.26410 7.42326 7.65583 7.91901 8.64911 9.09009 9.67583 11.15127 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.032588 B = 0.009645 C = 0.008014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.010461 B = 2902.346884 C = 3493.088432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.119 4.119 5 C -0.096 4.096 6 C -0.074 4.074 7 H 0.047 0.953 8 C -0.113 4.113 9 C -0.126 4.126 10 C -0.129 4.129 11 C 0.011 3.989 12 H 0.024 0.976 13 C -0.513 4.513 14 H 0.093 0.907 15 C 0.069 3.931 16 N -0.906 5.906 17 Si 0.874 3.126 18 H -0.280 1.280 19 H -0.297 1.297 20 H -0.267 1.267 21 H 0.066 0.934 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.066 0.934 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 10.390 4.790 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.156 4.156 5 C -0.133 4.133 6 C -0.093 4.093 7 H 0.066 0.934 8 C -0.150 4.150 9 C -0.163 4.163 10 C -0.167 4.167 11 C -0.008 4.008 12 H 0.042 0.958 13 C -0.551 4.551 14 H 0.111 0.889 15 C -0.132 4.132 16 N -0.545 5.545 17 Si 0.704 3.296 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.192 1.192 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.567 10.248 4.675 11.553 hybrid contribution 0.109 -0.970 0.655 1.176 sum 2.676 9.278 5.331 11.030 Atomic orbital electron populations 1.21875 0.95477 1.02580 1.00579 1.21121 0.95930 0.95291 0.99299 1.21847 1.00541 0.96820 1.01019 1.21809 0.99726 0.97532 0.96553 1.21750 1.01663 0.91305 0.98602 1.21593 0.97302 0.96821 0.93540 0.93398 1.22395 0.99927 0.96399 0.96328 1.22488 0.99646 0.96809 0.97392 1.22832 1.01694 0.95803 0.96344 1.19782 0.94941 0.91784 0.94314 0.95772 1.21547 1.35791 0.95049 1.02664 0.88886 1.25028 0.94732 0.98520 0.94880 1.69902 1.40591 1.20299 1.23703 0.87001 0.79376 0.81802 0.81437 1.20605 1.22390 1.19179 0.91509 0.93297 0.93589 0.91350 0.93144 0.93317 0.93154 0.92843 0.93111 0.91199 0.91123 0.93516 0.92066 0.92863 0.93164 0.94310 0.91486 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.95 37.16 0.33 -1.77 16 2 C -0.10 -1.39 2.92 -90.62 -0.26 -1.66 16 3 C -0.14 -1.72 9.19 37.15 0.34 -1.38 16 4 C -0.12 -1.83 4.52 -26.73 -0.12 -1.95 16 5 C -0.10 -1.83 2.80 -26.73 -0.07 -1.91 16 6 C -0.07 -1.45 2.94 -89.50 -0.26 -1.72 16 7 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 8 C -0.11 -1.96 5.46 -25.07 -0.14 -2.09 16 9 C -0.13 -2.24 6.91 -24.74 -0.17 -2.41 16 10 C -0.13 -2.81 4.69 -25.08 -0.12 -2.93 16 11 C 0.01 0.25 2.39 -90.66 -0.22 0.03 16 12 H 0.02 0.59 7.12 -51.93 -0.37 0.22 16 13 C -0.51 -13.97 8.08 -34.44 -0.28 -14.25 16 14 H 0.09 2.64 4.90 -52.49 -0.26 2.38 16 15 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 16 N -0.91 -27.65 13.96 55.43 0.77 -26.87 16 17 Si 0.87 22.12 24.70 -169.99 -4.20 17.92 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 20 H -0.27 -6.53 6.36 56.52 0.36 -6.17 16 21 H 0.07 1.08 6.57 -51.93 -0.34 0.74 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.79 7.46 -51.93 -0.39 0.40 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.44 5.67 -51.93 -0.29 1.15 16 31 H 0.07 1.51 6.85 -51.93 -0.36 1.15 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.06 7.78 -51.93 -0.40 0.66 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.04 0.85 5.85 -51.93 -0.30 0.54 16 37 H 0.07 1.55 7.85 -51.93 -0.41 1.14 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 281.48 15.07 4.24 4.24 Total: -1.00 -28.60 281.48 -7.20 -35.80 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.95 Total: -0.94 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: -1.07 Total: -30.15 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.20 Total: 17.92 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.60 -7.20 -35.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.238 kcal (2) G-P(sol) polarization free energy of solvation -28.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds