Wall clock time and date at job start Mon Mar 30 2020 02:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3 5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.01565 * 305.06698 * 6 5 4 8 8 C 1.54270 * 110.03278 * 66.45544 * 6 5 4 9 9 C 1.54888 * 104.19515 * 142.89766 * 8 6 5 10 10 C 1.54884 * 102.74825 * 322.05473 * 9 8 6 11 11 C 1.53875 * 110.03603 * 183.62115 * 6 5 4 12 12 H 1.09000 * 110.03278 * 121.42979 * 11 6 5 13 13 C 1.50695 * 110.03010 * 0.02562 * 11 6 5 14 14 H 1.08001 * 120.00014 * 359.97438 * 13 11 6 15 15 C 1.37875 * 120.00312 * 180.02562 * 13 11 6 16 16 N 1.31517 * 120.00580 * 179.97438 * 15 13 11 17 17 Si 1.86804 * 119.99705 * 359.97438 * 15 13 11 18 18 H 1.48497 * 109.46992 * 90.00361 * 17 15 13 19 19 H 1.48505 * 109.47173 * 210.00153 * 17 15 13 20 20 H 1.48501 * 109.47265 * 330.00298 * 17 15 13 21 21 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46227 * 299.99751 * 1 2 3 23 23 H 1.08996 * 109.47271 * 59.99107 * 1 2 3 24 24 H 1.09008 * 109.46731 * 240.00275 * 2 1 3 25 25 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47654 * 300.00659 * 3 2 1 27 27 H 1.09005 * 109.47243 * 60.00872 * 3 2 1 28 28 H 1.09001 * 109.46652 * 304.99694 * 4 2 1 29 29 H 1.08992 * 109.47514 * 184.99783 * 4 2 1 30 30 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 31 31 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 32 32 H 1.08999 * 110.48587 * 261.57474 * 8 6 5 33 33 H 1.08999 * 110.48476 * 24.21628 * 8 6 5 34 34 H 1.09000 * 110.75996 * 80.37311 * 9 8 6 35 35 H 1.09007 * 110.75236 * 203.55776 * 9 8 6 36 36 H 1.09006 * 110.48553 * 156.62419 * 10 9 8 37 37 H 1.09002 * 110.49254 * 279.13355 * 10 9 8 38 38 H 0.97000 * 120.00243 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 6 2.1448 -2.9168 2.4372 7 1 3.2199 -2.7696 2.5405 8 6 1.4160 -2.3850 3.6885 9 6 1.2273 -3.6379 4.5794 10 6 0.9108 -4.7474 3.5460 11 6 1.8236 -4.4189 2.3466 12 1 2.7429 -5.0016 2.4064 13 6 1.1067 -4.7165 1.0549 14 1 0.8951 -3.9185 0.3586 15 6 0.7201 -6.0072 0.7626 16 7 0.0940 -6.2669 -0.3645 17 14 1.0855 -7.3872 1.9674 18 1 -0.0470 -7.5276 2.9175 19 1 1.2675 -8.6592 1.2228 20 1 2.3265 -7.0720 2.7195 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 3.1301 1.4424 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6769 1.9563 0.8901 28 1 1.6055 -0.2618 2.1369 29 1 3.1264 -0.6445 1.2950 30 1 0.5489 -2.2724 1.1419 31 1 2.0698 -2.6550 0.3000 32 1 2.0283 -1.6421 4.1998 33 1 0.4493 -1.9616 3.4158 34 1 2.1436 -3.8667 5.1234 35 1 0.3946 -3.4996 5.2691 36 1 1.1544 -5.7288 3.9533 37 1 -0.1381 -4.7072 3.2521 38 1 -0.1777 -7.1750 -0.5703 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:32 Heat of formation + Delta-G solvation = -53.279168 kcal Electronic energy + Delta-G solvation = -14678.299815 eV Core-core repulsion = 12518.528354 eV Total energy + Delta-G solvation = -2159.771462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80760 -37.21660 -34.47526 -32.51279 -30.64005 -28.00920 -27.79415 -25.55270 -23.74070 -21.67051 -20.60234 -20.15148 -18.17568 -16.79020 -16.32515 -15.88523 -15.35092 -15.12092 -14.69252 -14.57182 -14.14252 -13.80992 -13.18720 -13.06719 -12.84848 -12.81041 -12.41574 -12.25709 -12.12494 -11.69651 -11.51642 -11.48787 -11.42225 -11.32306 -11.22937 -10.98990 -10.76163 -10.62287 -10.49530 -8.19504 -6.19468 1.31561 1.34580 1.43920 2.38632 3.14209 3.92631 3.97822 4.03210 4.14327 4.20153 4.24807 4.60789 4.65413 4.79712 4.84848 4.86640 4.88914 4.93724 4.97724 5.01175 5.05376 5.11329 5.14852 5.16972 5.23066 5.35794 5.37424 5.45058 5.51365 5.57992 5.61787 5.68743 5.78554 5.83193 5.93438 6.47970 6.90016 7.45036 8.95241 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.032588 B = 0.009645 C = 0.008014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.010461 B = 2902.346884 C = 3493.088432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.138 4.138 4 C -0.108 4.108 5 C -0.086 4.086 6 C -0.076 4.076 7 H 0.061 0.939 8 C -0.105 4.105 9 C -0.117 4.117 10 C -0.132 4.132 11 C 0.001 3.999 12 H 0.014 0.986 13 C -0.507 4.507 14 H 0.068 0.932 15 C 0.008 3.992 16 N -0.955 5.955 17 Si 0.931 3.069 18 H -0.271 1.271 19 H -0.300 1.300 20 H -0.252 1.252 21 H 0.035 0.965 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 12.069 7.260 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.195 4.195 4 C -0.145 4.145 5 C -0.123 4.123 6 C -0.095 4.095 7 H 0.080 0.920 8 C -0.143 4.143 9 C -0.154 4.154 10 C -0.170 4.170 11 C -0.018 4.018 12 H 0.032 0.968 13 C -0.545 4.545 14 H 0.086 0.914 15 C -0.187 4.187 16 N -0.597 5.597 17 Si 0.758 3.242 18 H -0.197 1.197 19 H -0.227 1.227 20 H -0.176 1.176 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.565 11.943 7.166 14.377 hybrid contribution -0.204 -1.453 -0.195 1.480 sum 3.362 10.490 6.971 13.036 Atomic orbital electron populations 1.21846 0.95672 1.00900 1.01884 1.21132 0.95816 0.96966 0.98032 1.21776 1.00985 0.94670 1.02104 1.21704 1.00436 0.94608 0.97797 1.21529 0.99702 0.94026 0.97056 1.21619 0.98560 0.94261 0.95052 0.92014 1.22351 1.00034 0.96973 0.94899 1.22470 1.01452 0.94807 0.96692 1.22718 0.99806 0.97576 0.96884 1.19847 0.94234 0.94670 0.93037 0.96805 1.21934 1.34454 0.94263 1.03845 0.91440 1.25807 0.95157 1.01242 0.96500 1.70049 1.42957 1.20727 1.25950 0.86072 0.79968 0.78617 0.79517 1.19694 1.22738 1.17574 0.94632 0.91924 0.92369 0.93118 0.92404 0.92361 0.91980 0.91212 0.92041 0.93736 0.94801 0.90099 0.92355 0.90946 0.90890 0.94430 0.93661 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.95 71.98 0.64 -3.43 16 2 C -0.10 -2.77 2.92 -10.80 -0.03 -2.80 16 3 C -0.14 -2.90 9.19 71.98 0.66 -2.24 16 4 C -0.11 -3.15 4.52 30.59 0.14 -3.01 16 5 C -0.09 -3.31 2.80 30.59 0.09 -3.22 16 6 C -0.08 -2.89 2.94 -10.07 -0.03 -2.92 16 7 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 8 C -0.11 -3.27 5.46 31.67 0.17 -3.10 16 9 C -0.12 -3.72 6.91 31.88 0.22 -3.50 16 10 C -0.13 -5.55 4.69 31.67 0.15 -5.40 16 11 C 0.00 0.05 2.39 -10.82 -0.03 0.02 16 12 H 0.01 0.67 7.12 -2.39 -0.02 0.65 16 13 C -0.51 -28.59 8.08 25.60 0.21 -28.38 16 14 H 0.07 4.07 4.90 -2.91 -0.01 4.06 16 15 C 0.01 0.50 5.46 84.65 0.46 0.96 16 16 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 17 Si 0.93 46.21 24.70 68.60 1.69 47.90 16 18 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 20 H -0.25 -11.73 6.36 99.48 0.63 -11.10 16 21 H 0.03 1.19 6.57 -2.39 -0.02 1.18 16 22 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.07 1.84 7.46 -2.39 -0.02 1.82 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.92 5.67 -2.39 -0.01 1.90 16 31 H 0.03 1.51 6.85 -2.39 -0.02 1.50 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.85 7.78 -2.39 -0.02 1.83 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.04 1.56 5.85 -2.38 -0.01 1.55 16 37 H 0.04 2.07 7.85 -2.39 -0.02 2.05 16 38 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -63.57 281.48 5.56 -58.01 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.92 Total: 11.58 kcal Atomic # 6 Polarization: -59.68 SS G_CDS: 2.65 Total: -57.03 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.30 Total: -60.46 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.69 Total: 47.90 kcal Total: -63.57 5.56 -58.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.730 kcal (2) G-P(sol) polarization free energy of solvation -63.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds