Wall clock time and date at job start Mon Mar 30 2020 02:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46946 * 2 1 4 4 C 1.53000 * 109.46988 * 119.99929 * 2 1 3 5 5 C 1.53001 * 109.47048 * 175.00199 * 4 2 1 6 6 C 1.53008 * 109.47051 * 179.97438 * 5 4 2 7 7 H 1.09003 * 110.53367 * 56.15883 * 6 5 4 8 8 C 1.54890 * 110.48546 * 293.54792 * 6 5 4 9 9 C 1.54887 * 102.91108 * 203.47179 * 8 6 5 10 10 C 1.54265 * 104.20056 * 37.84875 * 9 8 6 11 11 C 1.53877 * 106.59605 * 336.39127 * 10 9 8 12 12 H 1.09001 * 110.03400 * 119.32991 * 11 10 9 13 13 C 1.50695 * 110.03106 * 240.71546 * 11 10 9 14 14 H 1.08001 * 120.00126 * 118.54680 * 13 11 10 15 15 C 1.37878 * 120.00023 * 298.54193 * 13 11 10 16 16 N 1.31511 * 120.00131 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00051 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47377 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46946 * 120.00643 * 17 15 13 20 20 H 1.48503 * 109.47260 * 240.00182 * 17 15 13 21 21 H 1.09001 * 109.47222 * 300.00327 * 1 2 3 22 22 H 1.09003 * 109.46974 * 60.00520 * 1 2 3 23 23 H 1.09002 * 109.46717 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47222 * 239.99673 * 2 1 3 25 25 H 1.08996 * 109.47038 * 60.00070 * 3 2 1 26 26 H 1.09005 * 109.46803 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47145 * 299.99686 * 3 2 1 28 28 H 1.08999 * 109.47661 * 54.99992 * 4 2 1 29 29 H 1.09002 * 109.46739 * 294.99845 * 4 2 1 30 30 H 1.09001 * 109.47171 * 59.99954 * 5 4 2 31 31 H 1.08997 * 109.47003 * 299.99930 * 5 4 2 32 32 H 1.09002 * 110.75897 * 85.06297 * 8 6 5 33 33 H 1.09006 * 110.75292 * 321.87527 * 8 6 5 34 34 H 1.09004 * 110.48468 * 156.53190 * 9 8 6 35 35 H 1.09006 * 110.48476 * 279.16949 * 9 8 6 36 36 H 1.08995 * 110.03137 * 95.67051 * 10 9 8 37 37 H 1.08993 * 110.03408 * 217.10785 * 10 9 8 38 38 H 0.97003 * 120.00618 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 6 4.0749 -1.5517 2.4377 7 1 3.5988 -2.5272 2.5375 8 6 3.8204 -0.6923 3.7009 9 6 4.8788 -1.2230 4.6995 10 6 6.1212 -1.4932 3.8260 11 6 5.6112 -1.7046 2.3897 12 1 6.0384 -0.9519 1.7271 13 6 5.9800 -3.0843 1.9087 14 1 5.2057 -3.7872 1.6391 15 6 7.3062 -3.4493 1.8128 16 7 8.2492 -2.5936 2.1414 17 14 7.7634 -5.1598 1.2173 18 1 6.5276 -5.9251 0.9137 19 1 8.5922 -5.0515 -0.0102 20 1 8.5342 -5.8625 2.2744 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6054 -1.7198 1.2953 29 1 1.7516 -0.1582 2.1369 30 1 3.9994 0.1676 1.1421 31 1 3.8532 -1.3939 0.3003 32 1 2.8127 -0.8559 4.0828 33 1 3.9848 0.3642 3.4889 34 1 5.1007 -0.4703 5.4560 35 1 4.5334 -2.1451 5.1672 36 1 6.7953 -0.6374 3.8606 37 1 6.6355 -2.3886 4.1751 38 1 9.1821 -2.8504 2.0743 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:36 Heat of formation + Delta-G solvation = -67.289010 kcal Electronic energy + Delta-G solvation = -14409.748621 eV Core-core repulsion = 12249.369647 eV Total energy + Delta-G solvation = -2160.378974 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49437 -37.25232 -34.53141 -32.37686 -29.99841 -27.99222 -27.72946 -26.02041 -23.46265 -21.32268 -20.56500 -20.25432 -18.24489 -16.70835 -16.17365 -15.88388 -15.46562 -14.87033 -14.57584 -14.27634 -14.15290 -13.58194 -13.12227 -13.01974 -12.92424 -12.68572 -12.41958 -12.32814 -12.17469 -11.96263 -11.68337 -11.49543 -11.40525 -11.34526 -11.14994 -10.93503 -10.66661 -10.55357 -10.44066 -8.10440 -6.19345 1.37455 1.39101 1.50548 2.43184 3.20132 3.90152 4.05114 4.10505 4.18622 4.22573 4.28451 4.57899 4.71082 4.79307 4.86625 4.88890 4.93228 4.98547 5.02659 5.09022 5.10209 5.16630 5.20318 5.22831 5.33760 5.37890 5.44640 5.49890 5.58701 5.59829 5.67201 5.70788 5.77544 6.00753 6.06935 6.46610 6.94434 7.47550 8.98697 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.031738 B = 0.008001 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.005757 B = 3498.905996 C = 3988.597742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.104 4.104 5 C -0.098 4.098 6 C -0.081 4.081 7 H 0.051 0.949 8 C -0.105 4.105 9 C -0.121 4.121 10 C -0.088 4.088 11 C 0.042 3.958 12 H -0.010 1.010 13 C -0.523 4.523 14 H 0.049 0.951 15 C 0.007 3.993 16 N -0.923 5.923 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.026 0.974 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 5.417 -0.802 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.204 4.204 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.100 4.100 7 H 0.070 0.930 8 C -0.143 4.143 9 C -0.159 4.159 10 C -0.127 4.127 11 C 0.024 3.976 12 H 0.008 0.992 13 C -0.561 4.561 14 H 0.068 0.932 15 C -0.191 4.191 16 N -0.563 5.563 17 Si 0.775 3.225 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.957 5.430 -0.795 14.071 hybrid contribution 1.124 -1.018 -0.391 1.566 sum -11.833 4.412 -1.187 12.684 Atomic orbital electron populations 1.21798 0.94098 1.01803 1.02149 1.21145 0.96487 0.96459 0.97784 1.21863 1.00652 0.95806 1.02034 1.21608 0.94097 1.00206 0.98254 1.21496 0.96030 0.99187 0.96854 1.22034 0.95787 0.97439 0.94697 0.93020 1.22468 0.98258 0.98747 0.94804 1.22385 0.95852 1.00096 0.97519 1.21884 0.95839 0.97657 0.97309 1.19346 0.91602 0.94298 0.92403 0.99213 1.21679 0.91710 0.99643 1.43062 0.93233 1.25765 0.96817 1.00594 0.95887 1.70125 0.99959 1.36362 1.49810 0.85641 0.78267 0.80674 0.77935 1.19066 1.20735 1.20657 0.92190 0.92061 0.92794 0.92418 0.92176 0.93713 0.92063 0.92616 0.91193 0.92783 0.94482 0.90503 0.91815 0.91538 0.92441 0.96334 0.95497 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.19 71.98 0.66 -2.02 16 2 C -0.10 -2.38 2.92 -10.79 -0.03 -2.41 16 3 C -0.15 -3.28 8.95 71.98 0.64 -2.63 16 4 C -0.10 -2.87 4.53 30.59 0.14 -2.73 16 5 C -0.10 -3.51 4.34 30.60 0.13 -3.37 16 6 C -0.08 -3.31 2.43 -9.65 -0.02 -3.33 16 7 H 0.05 2.20 7.69 -2.39 -0.02 2.18 16 8 C -0.11 -3.61 5.50 31.88 0.18 -3.44 16 9 C -0.12 -4.60 6.83 31.67 0.22 -4.39 16 10 C -0.09 -4.38 5.56 31.32 0.17 -4.21 16 11 C 0.04 2.17 2.42 -10.75 -0.03 2.14 16 12 H -0.01 -0.60 7.84 -2.39 -0.02 -0.62 16 13 C -0.52 -29.80 8.35 25.60 0.21 -29.58 16 14 H 0.05 2.79 7.56 -2.91 -0.02 2.77 16 15 C 0.01 0.42 5.07 84.66 0.43 0.85 16 16 N -0.92 -55.78 12.33 21.45 0.26 -55.52 16 17 Si 0.95 45.10 29.54 68.60 2.03 47.12 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.04 1.13 6.56 -2.38 -0.02 1.12 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.77 7.39 -2.39 -0.02 1.75 16 30 H 0.05 1.92 6.52 -2.39 -0.02 1.91 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 2.20 8.01 -2.39 -0.02 2.18 16 33 H 0.06 2.07 8.02 -2.38 -0.02 2.06 16 34 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.03 1.47 7.17 -2.39 -0.02 1.45 16 38 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -61.91 293.88 5.97 -55.94 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.97 Total: 7.56 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 2.70 Total: -55.11 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.26 Total: -55.52 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -61.91 5.97 -55.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.349 kcal (2) G-P(sol) polarization free energy of solvation -61.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds