Wall clock time and date at job start Mon Mar 30 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47076 * 2 1 4 4 C 1.52999 * 109.46690 * 119.99792 * 2 1 3 5 5 H 1.09000 * 109.78960 * 178.39223 * 4 2 1 6 6 C 1.54236 * 109.63174 * 298.87966 * 4 2 1 7 7 C 1.45544 * 112.41475 * 199.70794 * 6 4 2 8 8 C 1.54239 * 112.40044 * 298.06320 * 7 6 4 9 9 C 1.50482 * 108.52589 * 79.97544 * 8 7 6 10 10 C 1.54069 * 112.49573 * 265.85090 * 9 8 7 11 11 C 1.50472 * 109.63166 * 57.90342 * 4 2 1 12 12 H 1.08998 * 108.87599 * 266.81719 * 11 4 2 13 13 C 1.50706 * 108.87461 * 25.35812 * 11 4 2 14 14 H 1.08003 * 119.99771 * 35.09130 * 13 11 4 15 15 C 1.37876 * 119.99644 * 215.09117 * 13 11 4 16 16 N 1.31510 * 119.99627 * 180.02562 * 15 13 11 17 17 Si 1.86796 * 120.00317 * 0.02562 * 15 13 11 18 18 H 1.48501 * 109.47179 * 270.00265 * 17 15 13 19 19 H 1.48503 * 109.47000 * 29.99892 * 17 15 13 20 20 H 1.48500 * 109.47119 * 149.99892 * 17 15 13 21 21 H 1.08998 * 109.47512 * 300.00279 * 1 2 3 22 22 H 1.09003 * 109.46680 * 60.00035 * 1 2 3 23 23 H 1.08998 * 109.47569 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47512 * 239.99720 * 2 1 3 25 25 H 1.09002 * 109.47109 * 173.26971 * 3 2 1 26 26 H 1.09000 * 109.47470 * 293.26794 * 3 2 1 27 27 H 1.09000 * 109.47339 * 53.27073 * 3 2 1 28 28 H 1.09005 * 108.89750 * 320.46272 * 6 4 2 29 29 H 1.09002 * 108.89496 * 78.95189 * 6 4 2 30 30 H 1.09005 * 108.89420 * 58.81475 * 7 6 4 31 31 H 1.08997 * 108.89894 * 177.40290 * 7 6 4 32 32 H 1.09000 * 109.63179 * 199.68266 * 8 7 6 33 33 H 1.08997 * 109.63255 * 320.07184 * 8 7 6 34 34 H 1.08997 * 108.87842 * 26.63312 * 9 8 7 35 35 H 1.08999 * 108.87470 * 145.07989 * 9 8 7 36 36 H 1.08998 * 108.81932 * 280.85816 * 10 9 8 37 37 H 1.09004 * 108.81052 * 162.58278 * 10 9 8 38 38 H 0.96998 * 120.00036 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1295 -0.7493 1.2403 6 6 1.5510 0.0192 2.5109 7 6 2.3411 -0.3092 3.6883 8 6 2.2605 -1.8061 4.0514 9 6 3.1967 -2.5673 3.1522 10 6 2.4896 -3.1260 1.9025 11 6 1.4983 -2.1248 1.2792 12 1 0.5765 -2.1348 1.8607 13 6 1.1893 -2.5582 -0.1308 14 1 1.8152 -2.2280 -0.9466 15 6 0.1076 -3.3764 -0.3790 16 7 -0.1617 -3.7550 -1.6092 17 14 -0.9752 -3.9470 1.0321 18 1 -0.4485 -5.2250 1.5748 19 1 -0.9763 -2.9178 2.1027 20 1 -2.3615 -4.1517 0.5408 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1233 1.4448 0.1204 26 1 1.7783 1.9204 -0.9441 27 1 1.5816 1.9899 0.8236 28 1 1.6098 1.0934 2.3348 29 1 0.5113 -0.2496 2.6974 30 1 3.3822 -0.0474 3.4990 31 1 1.9779 0.2774 4.5321 32 1 2.5560 -1.9471 5.0910 33 1 1.2405 -2.1630 3.9090 34 1 3.9999 -1.9022 2.8352 35 1 3.6284 -3.3961 3.7132 36 1 1.9481 -4.0304 2.1798 37 1 3.2431 -3.3843 1.1584 38 1 -0.9225 -4.3309 -1.7839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260999249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:27 Heat of formation + Delta-G solvation = -30.684230 kcal Electronic energy + Delta-G solvation = -15488.765716 eV Core-core repulsion = 13329.974044 eV Total energy + Delta-G solvation = -2158.791672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.03589 -34.77302 -33.04993 -31.22045 -29.72876 -26.56496 -25.31596 -24.21163 -22.02243 -20.90409 -19.02845 -17.64097 -16.58782 -15.23892 -14.29266 -14.10700 -13.69798 -13.51642 -12.94862 -12.79584 -12.66701 -12.25806 -11.82899 -11.61328 -11.32176 -11.09042 -10.88884 -10.63192 -10.37613 -10.28665 -9.95977 -9.92155 -9.74050 -9.58450 -9.35254 -9.22181 -8.85682 -8.43782 -8.35642 -5.99045 -3.91803 3.31534 3.40230 3.41282 4.47373 5.21580 5.26661 5.38219 5.48134 5.80096 5.84286 5.91497 5.95921 6.08584 6.12742 6.23202 6.28943 6.37006 6.46295 6.51801 6.57867 6.65161 6.69561 6.70700 6.78764 6.83285 6.85750 6.96595 7.08632 7.16827 7.26701 7.46604 7.55444 7.62500 7.77141 7.92310 8.64208 9.05515 9.63280 11.13851 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.024978 B = 0.016307 C = 0.011969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.717290 B = 1716.604308 C = 2338.791880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.150 4.150 4 C -0.055 4.055 5 H 0.051 0.949 6 C -0.122 4.122 7 C -0.109 4.109 8 C -0.116 4.116 9 C -0.120 4.120 10 C -0.110 4.110 11 C 0.005 3.995 12 H 0.039 0.961 13 C -0.490 4.490 14 H 0.078 0.922 15 C 0.069 3.931 16 N -0.906 5.906 17 Si 0.862 3.138 18 H -0.279 1.279 19 H -0.259 1.259 20 H -0.292 1.292 21 H 0.028 0.972 22 H 0.029 0.971 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 6.286 8.286 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C -0.207 4.207 4 C -0.074 4.074 5 H 0.069 0.931 6 C -0.159 4.159 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.157 4.157 10 C -0.148 4.148 11 C -0.014 4.014 12 H 0.057 0.943 13 C -0.528 4.528 14 H 0.095 0.905 15 C -0.132 4.132 16 N -0.545 5.545 17 Si 0.691 3.309 18 H -0.205 1.205 19 H -0.184 1.184 20 H -0.218 1.218 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.110 0.890 24 H 0.101 0.899 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.384 6.178 8.169 10.786 hybrid contribution -0.663 -0.484 0.703 1.081 sum 2.720 5.694 8.872 10.888 Atomic orbital electron populations 1.21993 0.95845 1.04253 0.98065 1.20974 0.96113 0.92523 0.99310 1.22028 0.99922 0.98635 1.00159 1.20798 0.98316 0.96061 0.92225 0.93054 1.20700 0.99813 0.99891 0.95504 1.20448 1.00306 0.96027 0.97826 1.21325 1.00801 0.95425 0.97816 1.21426 0.98347 0.98777 0.97162 1.22249 0.99069 0.99023 0.94482 1.19203 0.94761 0.90711 0.96710 0.94326 1.21126 1.11587 1.28245 0.91887 0.90452 1.25005 0.97531 0.95801 0.94826 1.69895 1.29180 1.36403 1.18977 0.87085 0.80257 0.79646 0.83939 1.20520 1.18446 1.21844 0.95279 0.95202 0.88975 0.89920 0.93877 0.93975 0.93538 0.92853 0.92725 0.92858 0.93688 0.93335 0.91795 0.92858 0.94026 0.94340 0.92752 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.42 37.16 0.31 -2.67 16 2 C -0.07 -1.40 2.21 -90.62 -0.20 -1.60 16 3 C -0.15 -2.45 8.69 37.16 0.32 -2.13 16 4 C -0.06 -1.08 1.61 -91.24 -0.15 -1.22 16 5 H 0.05 0.99 6.98 -51.93 -0.36 0.62 16 6 C -0.12 -2.08 3.72 -29.60 -0.11 -2.19 16 7 C -0.11 -1.66 5.26 -29.60 -0.16 -1.81 16 8 C -0.12 -1.86 5.60 -27.34 -0.15 -2.01 16 9 C -0.12 -2.03 5.31 -27.43 -0.15 -2.17 16 10 C -0.11 -2.28 5.15 -25.62 -0.13 -2.41 16 11 C 0.00 0.11 0.54 -92.48 -0.05 0.06 16 12 H 0.04 0.90 3.43 -51.93 -0.18 0.73 16 13 C -0.49 -12.79 5.62 -34.44 -0.19 -12.99 16 14 H 0.08 2.21 6.39 -52.48 -0.34 1.87 16 15 C 0.07 1.90 4.65 -17.82 -0.08 1.81 16 16 N -0.91 -26.96 13.96 55.43 0.77 -26.19 16 17 Si 0.86 21.25 26.59 -169.99 -4.52 16.73 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.26 -6.10 5.95 56.52 0.34 -5.77 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H 0.03 0.54 6.93 -51.93 -0.36 0.18 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.09 2.20 4.59 -51.93 -0.24 1.96 16 24 H 0.08 1.85 6.04 -51.93 -0.31 1.53 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.71 6.37 -51.93 -0.33 0.38 16 28 H 0.05 0.84 5.71 -51.93 -0.30 0.55 16 29 H 0.05 1.00 6.87 -51.93 -0.36 0.64 16 30 H 0.05 0.78 7.47 -51.93 -0.39 0.39 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.13 6.99 -51.93 -0.36 0.77 16 34 H 0.05 0.87 6.63 -51.93 -0.34 0.52 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.04 0.82 7.48 -51.93 -0.39 0.43 16 37 H 0.05 1.16 7.97 -51.93 -0.41 0.74 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 264.50 15.07 3.99 3.99 Total: -1.00 -27.34 264.50 -6.90 -34.24 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.41 Total: 0.56 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: -0.73 Total: -29.33 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.77 Total: -26.19 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.52 Total: 16.73 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.34 -6.90 -34.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260999249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.553 kcal (2) G-P(sol) polarization free energy of solvation -27.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds