Wall clock time and date at job start Mon Mar 30 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47076 * 2 1 4 4 C 1.52999 * 109.46690 * 119.99792 * 2 1 3 5 5 H 1.09000 * 109.78960 * 178.39223 * 4 2 1 6 6 C 1.54236 * 109.63174 * 298.87966 * 4 2 1 7 7 C 1.45544 * 112.41475 * 199.70794 * 6 4 2 8 8 C 1.54239 * 112.40044 * 298.06320 * 7 6 4 9 9 C 1.50482 * 108.52589 * 79.97544 * 8 7 6 10 10 C 1.54069 * 112.49573 * 265.85090 * 9 8 7 11 11 C 1.50472 * 109.63166 * 57.90342 * 4 2 1 12 12 H 1.08998 * 108.87599 * 266.81719 * 11 4 2 13 13 C 1.50706 * 108.87461 * 25.35812 * 11 4 2 14 14 H 1.08003 * 119.99771 * 35.09130 * 13 11 4 15 15 C 1.37876 * 119.99644 * 215.09117 * 13 11 4 16 16 N 1.31510 * 119.99627 * 180.02562 * 15 13 11 17 17 Si 1.86796 * 120.00317 * 0.02562 * 15 13 11 18 18 H 1.48501 * 109.47179 * 270.00265 * 17 15 13 19 19 H 1.48503 * 109.47000 * 29.99892 * 17 15 13 20 20 H 1.48500 * 109.47119 * 149.99892 * 17 15 13 21 21 H 1.08998 * 109.47512 * 300.00279 * 1 2 3 22 22 H 1.09003 * 109.46680 * 60.00035 * 1 2 3 23 23 H 1.08998 * 109.47569 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47512 * 239.99720 * 2 1 3 25 25 H 1.09002 * 109.47109 * 173.26971 * 3 2 1 26 26 H 1.09000 * 109.47470 * 293.26794 * 3 2 1 27 27 H 1.09000 * 109.47339 * 53.27073 * 3 2 1 28 28 H 1.09005 * 108.89750 * 320.46272 * 6 4 2 29 29 H 1.09002 * 108.89496 * 78.95189 * 6 4 2 30 30 H 1.09005 * 108.89420 * 58.81475 * 7 6 4 31 31 H 1.08997 * 108.89894 * 177.40290 * 7 6 4 32 32 H 1.09000 * 109.63179 * 199.68266 * 8 7 6 33 33 H 1.08997 * 109.63255 * 320.07184 * 8 7 6 34 34 H 1.08997 * 108.87842 * 26.63312 * 9 8 7 35 35 H 1.08999 * 108.87470 * 145.07989 * 9 8 7 36 36 H 1.08998 * 108.81932 * 280.85816 * 10 9 8 37 37 H 1.09004 * 108.81052 * 162.58278 * 10 9 8 38 38 H 0.96998 * 120.00036 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1295 -0.7493 1.2403 6 6 1.5510 0.0192 2.5109 7 6 2.3411 -0.3092 3.6883 8 6 2.2605 -1.8061 4.0514 9 6 3.1967 -2.5673 3.1522 10 6 2.4896 -3.1260 1.9025 11 6 1.4983 -2.1248 1.2792 12 1 0.5765 -2.1348 1.8607 13 6 1.1893 -2.5582 -0.1308 14 1 1.8152 -2.2280 -0.9466 15 6 0.1076 -3.3764 -0.3790 16 7 -0.1617 -3.7550 -1.6092 17 14 -0.9752 -3.9470 1.0321 18 1 -0.4485 -5.2250 1.5748 19 1 -0.9763 -2.9178 2.1027 20 1 -2.3615 -4.1517 0.5408 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1233 1.4448 0.1204 26 1 1.7783 1.9204 -0.9441 27 1 1.5816 1.9899 0.8236 28 1 1.6098 1.0934 2.3348 29 1 0.5113 -0.2496 2.6974 30 1 3.3822 -0.0474 3.4990 31 1 1.9779 0.2774 4.5321 32 1 2.5560 -1.9471 5.0910 33 1 1.2405 -2.1630 3.9090 34 1 3.9999 -1.9022 2.8352 35 1 3.6284 -3.3961 3.7132 36 1 1.9481 -4.0304 2.1798 37 1 3.2431 -3.3843 1.1584 38 1 -0.9225 -4.3309 -1.7839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260999249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:27 Heat of formation + Delta-G solvation = -45.167720 kcal Electronic energy + Delta-G solvation = -15489.393767 eV Core-core repulsion = 13329.974044 eV Total energy + Delta-G solvation = -2159.419723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56881 -36.22493 -34.91964 -32.97537 -31.24099 -28.18924 -27.02141 -25.71930 -23.70298 -22.34668 -20.49477 -19.41325 -18.50590 -16.77998 -15.97929 -15.70165 -15.25605 -15.05577 -14.61609 -14.34122 -14.21230 -13.95396 -13.46397 -13.06542 -12.86746 -12.69525 -12.59204 -12.22332 -11.97441 -11.91712 -11.56735 -11.44907 -11.33457 -11.11573 -10.98426 -10.81052 -10.57337 -10.42346 -10.18034 -8.16085 -6.09487 1.32020 1.35118 1.42494 2.39875 3.20045 3.90499 4.01610 4.18722 4.34482 4.42705 4.44013 4.55165 4.69002 4.73592 4.78390 4.94352 4.96378 5.01073 5.04837 5.09819 5.18735 5.22201 5.33415 5.37523 5.41340 5.45288 5.54657 5.55226 5.64081 5.68071 5.77629 5.85250 5.90002 5.96439 6.09927 6.54021 6.91749 7.47891 9.00599 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.024978 B = 0.016307 C = 0.011969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.717290 B = 1716.604308 C = 2338.791880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C -0.141 4.141 4 C -0.055 4.055 5 H 0.055 0.945 6 C -0.115 4.115 7 C -0.109 4.109 8 C -0.118 4.118 9 C -0.112 4.112 10 C -0.111 4.111 11 C 0.008 3.992 12 H 0.031 0.969 13 C -0.470 4.470 14 H 0.040 0.960 15 C 0.015 3.985 16 N -0.957 5.957 17 Si 0.912 3.088 18 H -0.277 1.277 19 H -0.239 1.239 20 H -0.296 1.296 21 H 0.051 0.949 22 H 0.030 0.970 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.024 0.976 37 H 0.037 0.963 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 8.034 11.230 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.073 4.073 5 H 0.074 0.926 6 C -0.152 4.152 7 C -0.147 4.147 8 C -0.155 4.155 9 C -0.150 4.150 10 C -0.149 4.149 11 C -0.011 4.011 12 H 0.049 0.951 13 C -0.509 4.509 14 H 0.058 0.942 15 C -0.180 4.180 16 N -0.599 5.599 17 Si 0.739 3.261 18 H -0.203 1.203 19 H -0.163 1.163 20 H -0.223 1.223 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.166 7.939 11.138 14.298 hybrid contribution -0.843 -1.011 -0.292 1.348 sum 3.322 6.929 10.846 13.292 Atomic orbital electron populations 1.21907 0.96624 1.02118 0.99222 1.20904 0.95441 0.94869 0.97953 1.21909 1.00737 0.95831 1.01294 1.20750 0.98406 0.94470 0.93685 0.92645 1.20635 0.99230 1.00566 0.94741 1.20452 1.00835 0.95719 0.97665 1.21354 0.99257 0.95779 0.99132 1.21356 0.98432 0.99734 0.95473 1.22153 0.98366 0.98214 0.96176 1.19196 0.95180 0.92962 0.93749 0.95079 1.21339 1.09966 1.26332 0.93240 0.94169 1.25649 0.99201 0.96555 0.96614 1.70042 1.30279 1.38388 1.21212 0.86260 0.78328 0.79657 0.81850 1.20304 1.16306 1.22293 0.93023 0.95073 0.92680 0.93914 0.92608 0.93498 0.91608 0.90880 0.94032 0.91539 0.91179 0.90508 0.93778 0.91770 0.92302 0.95715 0.94408 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 8.42 71.98 0.61 -5.19 16 2 C -0.07 -2.85 2.21 -10.80 -0.02 -2.87 16 3 C -0.14 -4.22 8.69 71.98 0.63 -3.59 16 4 C -0.05 -2.03 1.61 -11.19 -0.02 -2.05 16 5 H 0.06 2.02 6.98 -2.39 -0.02 2.00 16 6 C -0.11 -3.49 3.72 28.74 0.11 -3.38 16 7 C -0.11 -2.81 5.26 28.74 0.15 -2.65 16 8 C -0.12 -3.29 5.60 30.20 0.17 -3.12 16 9 C -0.11 -3.47 5.31 30.14 0.16 -3.31 16 10 C -0.11 -4.50 5.15 31.32 0.16 -4.34 16 11 C 0.01 0.35 0.54 -12.00 -0.01 0.34 16 12 H 0.03 1.43 3.43 -2.39 -0.01 1.42 16 13 C -0.47 -25.45 5.62 25.60 0.14 -25.31 16 14 H 0.04 2.44 6.39 -2.91 -0.02 2.42 16 15 C 0.01 0.85 4.65 84.66 0.39 1.25 16 16 N -0.96 -59.71 13.96 21.45 0.30 -59.42 16 17 Si 0.91 44.57 26.59 68.60 1.82 46.39 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 19 H -0.24 -10.78 5.95 99.48 0.59 -10.19 16 20 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 21 H 0.05 1.84 6.93 -2.39 -0.02 1.82 16 22 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.05 2.67 4.59 -2.39 -0.01 2.66 16 24 H 0.04 1.98 6.04 -2.39 -0.01 1.97 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.73 6.37 -2.39 -0.02 1.72 16 28 H 0.07 1.95 5.71 -2.38 -0.01 1.94 16 29 H 0.04 1.38 6.87 -2.39 -0.02 1.36 16 30 H 0.07 1.57 7.47 -2.38 -0.02 1.56 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.42 6.99 -2.39 -0.02 1.40 16 34 H 0.06 1.85 6.63 -2.39 -0.02 1.84 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.02 1.04 7.48 -2.39 -0.02 1.02 16 37 H 0.04 1.61 7.97 -2.39 -0.02 1.60 16 38 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -61.26 264.50 5.49 -55.77 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.90 Total: 11.48 kcal Atomic # 6 Polarization: -56.69 SS G_CDS: 2.47 Total: -54.23 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.30 Total: -59.42 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.82 Total: 46.39 kcal Total: -61.26 5.49 -55.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260999249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.598 kcal (2) G-P(sol) polarization free energy of solvation -61.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds