Wall clock time and date at job start Mon Mar 30 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47284 * 2 1 4 4 C 1.53003 * 109.47518 * 239.99353 * 2 1 3 5 5 C 1.53005 * 109.46800 * 119.99609 * 2 1 3 6 6 H 1.09002 * 110.05665 * 178.09070 * 5 2 1 7 7 C 1.54261 * 110.03301 * 299.51023 * 5 2 1 8 8 C 1.54897 * 104.19546 * 142.89646 * 7 5 2 9 9 C 1.54890 * 102.74663 * 322.05398 * 8 7 5 10 10 C 1.53878 * 110.03338 * 56.68128 * 5 2 1 11 11 H 1.09003 * 110.02848 * 0.04408 * 10 5 2 12 12 C 1.52999 * 110.03563 * 121.42991 * 10 5 2 13 13 C 1.50697 * 109.46722 * 184.99872 * 12 10 5 14 14 H 1.08000 * 120.00362 * 0.02562 * 13 12 10 15 15 C 1.37887 * 119.99576 * 179.97438 * 13 12 10 16 16 N 1.31507 * 120.00034 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99943 * 180.27569 * 15 13 12 18 18 H 1.48495 * 109.47271 * 179.72352 * 17 15 13 19 19 H 1.48496 * 109.47315 * 299.72677 * 17 15 13 20 20 H 1.48509 * 109.46944 * 59.72517 * 17 15 13 21 21 H 1.08994 * 109.47358 * 304.98130 * 1 2 3 22 22 H 1.09004 * 109.46679 * 64.97604 * 1 2 3 23 23 H 1.08998 * 109.47257 * 184.97725 * 1 2 3 24 24 H 1.08998 * 109.46807 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46947 * 299.99621 * 3 2 1 26 26 H 1.09000 * 109.47252 * 59.99696 * 3 2 1 27 27 H 1.08993 * 109.47199 * 300.00527 * 4 2 1 28 28 H 1.09001 * 109.46793 * 60.00330 * 4 2 1 29 29 H 1.08997 * 109.47260 * 180.02562 * 4 2 1 30 30 H 1.09000 * 110.48701 * 261.57355 * 7 5 2 31 31 H 1.09000 * 110.48774 * 24.08499 * 7 5 2 32 32 H 1.08990 * 110.75580 * 80.37471 * 8 7 5 33 33 H 1.09006 * 110.75173 * 203.55967 * 8 7 5 34 34 H 1.08998 * 110.49100 * 279.26857 * 9 8 7 35 35 H 1.09002 * 110.48570 * 156.62001 * 9 8 7 36 36 H 1.09000 * 109.47110 * 64.99959 * 12 10 5 37 37 H 1.08997 * 109.46902 * 304.99725 * 12 10 5 38 38 H 0.97001 * 120.00213 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 2.0399 -0.7212 1.2494 6 1 3.1293 -0.7564 1.2422 7 6 1.5430 0.0031 2.5175 8 6 1.2428 -1.1423 3.5161 9 6 0.6416 -2.2412 2.6051 10 6 1.4669 -2.1482 1.3050 11 1 0.8262 -2.3272 0.4416 12 6 2.6057 -3.1696 1.3329 13 6 2.0333 -4.5619 1.2635 14 1 0.9643 -4.7041 1.2049 15 6 2.8746 -5.6544 1.2737 16 7 4.1763 -5.4813 1.3446 17 14 2.1656 -7.3800 1.1799 18 1 3.2711 -8.3712 1.2009 19 1 1.2710 -7.6116 2.3423 20 1 1.3909 -7.5292 -0.0784 21 1 -0.3634 0.5891 0.8419 22 1 -0.3633 0.4347 -0.9313 23 1 -0.3634 -1.0238 0.0892 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 -1.7490 -1.2491 28 1 1.6768 -0.2076 -2.1392 29 1 3.1301 -0.7218 -1.2489 30 1 2.3195 0.6589 2.9113 31 1 0.6380 0.5713 2.3024 32 1 2.1601 -1.4921 3.9896 33 1 0.5206 -0.8209 4.2667 34 1 -0.4102 -2.0373 2.4047 35 1 0.7603 -3.2233 3.0629 36 1 3.1733 -3.0558 2.2565 37 1 3.2632 -3.0041 0.4795 38 1 4.7681 -6.2498 1.3522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261105875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:38 Heat of formation + Delta-G solvation = -60.334435 kcal Electronic energy + Delta-G solvation = -14922.285685 eV Core-core repulsion = 12762.208284 eV Total energy + Delta-G solvation = -2160.077401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63276 -36.23719 -34.85714 -31.89684 -28.80886 -28.27508 -28.06008 -27.17416 -24.39619 -21.81668 -20.55804 -19.02994 -18.13944 -16.86647 -16.51150 -15.87780 -15.17126 -14.82473 -14.55177 -14.28798 -13.70544 -13.39503 -13.28913 -13.12281 -12.94867 -12.69045 -12.48115 -12.41948 -12.30412 -12.01853 -11.81024 -11.63252 -11.51257 -11.25011 -11.04268 -11.00970 -10.80751 -10.57284 -10.49127 -8.16433 -6.25826 1.37614 1.40512 1.48181 2.41291 3.16004 3.83442 3.86163 3.88406 4.24655 4.28209 4.33801 4.71586 4.74420 4.76492 4.82718 4.88168 4.92027 4.97479 5.00142 5.01905 5.07861 5.14184 5.17518 5.26441 5.32483 5.35691 5.41106 5.43528 5.55503 5.58670 5.67866 5.72981 5.77377 5.89960 5.98267 6.32762 6.91138 7.42117 8.95003 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.037636 B = 0.008846 C = 0.008197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.786221 B = 3164.360043 C = 3415.114328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.141 4.141 5 C -0.078 4.078 6 H 0.039 0.961 7 C -0.109 4.109 8 C -0.121 4.121 9 C -0.113 4.113 10 C -0.073 4.073 11 H 0.057 0.943 12 C 0.042 3.958 13 C -0.528 4.528 14 H 0.057 0.943 15 C -0.003 4.003 16 N -0.936 5.936 17 Si 0.958 3.042 18 H -0.284 1.284 19 H -0.267 1.267 20 H -0.268 1.268 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.042 0.958 36 H -0.018 1.018 37 H -0.020 1.020 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 12.556 -0.667 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.060 4.060 3 C -0.191 4.191 4 C -0.198 4.198 5 C -0.097 4.097 6 H 0.058 0.942 7 C -0.146 4.146 8 C -0.158 4.158 9 C -0.150 4.150 10 C -0.091 4.091 11 H 0.075 0.925 12 C 0.005 3.995 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.200 4.200 16 N -0.576 5.576 17 Si 0.783 3.217 18 H -0.210 1.210 19 H -0.192 1.192 20 H -0.193 1.193 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.000 1.000 37 H -0.001 1.001 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.422 12.466 -0.673 14.524 hybrid contribution 0.449 -1.484 -0.083 1.553 sum -6.973 10.981 -0.756 13.030 Atomic orbital electron populations 1.21937 0.93846 1.01690 1.02121 1.20525 0.96304 0.95550 0.93594 1.21836 1.00431 0.94422 1.02450 1.21880 1.00088 0.99939 0.97875 1.21870 0.98220 0.94256 0.95357 0.94216 1.22453 1.01449 0.96831 0.93884 1.22450 0.99931 0.95792 0.97663 1.22312 0.98566 0.98364 0.95779 1.21764 0.96418 0.93635 0.97269 0.92455 1.19005 0.93515 0.93406 0.93584 1.21645 0.93148 0.92636 1.49198 0.92456 1.25952 0.95158 1.03671 0.95211 1.70101 1.03713 1.31632 1.52196 0.85605 0.77960 0.79016 0.79117 1.20972 1.19241 1.19286 0.91289 0.91915 0.93560 0.93662 0.91685 0.91479 0.94392 0.91364 0.94329 0.91665 0.89379 0.93939 0.90097 0.91339 0.93877 1.00000 1.00147 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 7.91 71.98 0.57 -2.88 16 2 C -0.06 -1.69 0.53 -52.18 -0.03 -1.71 16 3 C -0.13 -3.06 8.23 71.98 0.59 -2.46 16 4 C -0.14 -4.42 8.26 71.98 0.59 -3.82 16 5 C -0.08 -2.70 1.95 -10.07 -0.02 -2.72 16 6 H 0.04 1.57 7.67 -2.39 -0.02 1.55 16 7 C -0.11 -3.07 5.07 31.67 0.16 -2.91 16 8 C -0.12 -3.85 6.91 31.89 0.22 -3.63 16 9 C -0.11 -4.23 6.19 31.67 0.20 -4.04 16 10 C -0.07 -3.02 1.39 -10.07 -0.01 -3.03 16 11 H 0.06 2.42 5.00 -2.39 -0.01 2.41 16 12 C 0.04 2.28 4.16 29.85 0.12 2.40 16 13 C -0.53 -30.70 8.16 25.60 0.21 -30.49 16 14 H 0.06 3.21 7.72 -2.91 -0.02 3.18 16 15 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 16 N -0.94 -58.69 13.29 21.45 0.28 -58.40 16 17 Si 0.96 45.50 29.54 68.60 2.03 47.52 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H 0.07 1.48 6.29 -2.39 -0.02 1.47 16 22 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 23 H 0.05 1.31 6.13 -2.39 -0.01 1.29 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.35 7.05 -2.39 -0.02 1.33 16 27 H 0.04 1.38 6.69 -2.39 -0.02 1.36 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 2.07 5.57 -2.39 -0.01 2.06 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.04 1.87 7.15 -2.39 -0.02 1.86 16 36 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 37 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 38 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -64.79 285.51 6.37 -58.42 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 0.99 Total: 7.45 kcal Atomic # 6 Polarization: -58.06 SS G_CDS: 3.07 Total: -54.99 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.28 Total: -58.40 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -64.79 6.37 -58.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.915 kcal (2) G-P(sol) polarization free energy of solvation -64.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds