Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47154 * 2 1 4 4 C 1.52994 * 109.47277 * 239.99649 * 2 1 3 5 5 C 1.53006 * 109.46946 * 119.99662 * 2 1 3 6 6 H 1.09002 * 110.05295 * 277.84872 * 5 2 1 7 7 C 1.54264 * 110.03091 * 39.26440 * 5 2 1 8 8 C 1.54898 * 104.19402 * 142.89289 * 7 5 2 9 9 C 1.54887 * 102.91493 * 321.96461 * 8 7 5 10 10 C 1.53872 * 110.02997 * 156.43184 * 5 2 1 11 11 H 1.09004 * 110.02983 * 121.43302 * 10 5 2 12 12 C 1.53003 * 110.03508 * 359.97438 * 10 5 2 13 13 C 1.50695 * 109.47191 * 162.78700 * 12 10 5 14 14 H 1.08006 * 120.00283 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00344 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99612 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00431 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47340 * 59.99379 * 17 15 13 19 19 H 1.48492 * 109.47241 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46761 * 299.99954 * 17 15 13 21 21 H 1.09003 * 109.47407 * 272.98287 * 1 2 3 22 22 H 1.09007 * 109.47081 * 32.98272 * 1 2 3 23 23 H 1.08997 * 109.47304 * 152.97847 * 1 2 3 24 24 H 1.08999 * 109.47226 * 14.03076 * 3 2 1 25 25 H 1.09001 * 109.46976 * 134.03419 * 3 2 1 26 26 H 1.09002 * 109.46665 * 254.03564 * 3 2 1 27 27 H 1.09004 * 109.47148 * 282.62906 * 4 2 1 28 28 H 1.09004 * 109.47517 * 42.62608 * 4 2 1 29 29 H 1.09000 * 109.47664 * 162.62643 * 4 2 1 30 30 H 1.09004 * 110.48842 * 24.22047 * 7 5 2 31 31 H 1.09001 * 110.49055 * 261.57364 * 7 5 2 32 32 H 1.09000 * 110.75179 * 80.37149 * 8 7 5 33 33 H 1.08997 * 110.75355 * 203.55568 * 8 7 5 34 34 H 1.09005 * 110.48410 * 156.70996 * 9 8 7 35 35 H 1.08997 * 110.48918 * 279.35804 * 9 8 7 36 36 H 1.08995 * 109.47327 * 282.79135 * 12 10 5 37 37 H 1.09002 * 109.46797 * 42.78954 * 12 10 5 38 38 H 0.96994 * 119.99765 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0399 -0.7212 1.2493 6 1 2.0327 -0.0422 2.1020 7 6 1.1581 -1.9517 1.5461 8 6 2.1560 -3.0192 2.0598 9 6 3.4006 -2.7875 1.1674 10 6 3.4649 -1.2494 1.0082 11 1 4.1492 -0.8268 1.7439 12 6 3.9254 -0.8887 -0.4056 13 6 5.4239 -1.0210 -0.4949 14 1 5.9911 -1.3317 0.3701 15 6 6.0709 -0.7453 -1.6808 16 7 5.3802 -0.3673 -2.7342 17 14 7.9283 -0.9100 -1.7917 18 1 8.3204 -2.3092 -1.4859 19 1 8.3754 -0.5585 -3.1634 20 1 8.5658 0.0076 -0.8134 21 1 -0.3634 0.0535 1.0263 22 1 -0.3633 0.8621 -0.5595 23 1 -0.3634 -0.9154 -0.4669 24 1 1.2211 2.1174 0.2491 25 1 2.8346 1.5470 0.7388 26 1 2.4276 1.6908 -0.9881 27 1 1.9493 -1.7985 -1.1092 28 1 1.4482 -0.4160 -2.1122 29 1 3.0858 -0.4634 -1.4162 30 1 0.6655 -2.2963 0.6368 31 1 0.4215 -1.7168 2.3145 32 1 2.3964 -2.8498 3.1094 33 1 1.7572 -4.0229 1.9135 34 1 4.2982 -3.1616 1.6599 35 1 3.2688 -3.2665 0.1972 36 1 3.4577 -1.5627 -1.1232 37 1 3.6373 0.1382 -0.6305 38 1 5.8353 -0.1738 -3.5686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261105880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = 81.679653 kcal Electronic energy + Delta-G solvation = -15344.566145 eV Core-core repulsion = 13190.646937 eV Total energy + Delta-G solvation = -2153.919208 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.13437 -34.45475 -33.44071 -30.85711 -27.22925 -27.13076 -26.39750 -25.54141 -22.14227 -20.17589 -19.00910 -17.73770 -16.33974 -15.05918 -14.63744 -14.20012 -13.94061 -13.45787 -13.00748 -12.57622 -12.09005 -11.89150 -11.62111 -11.52370 -11.09389 -10.84107 -10.77325 -10.65408 -10.43390 -10.40090 -10.26393 -9.96991 -9.67336 -9.57328 -9.52076 -9.24261 -8.94408 -8.18314 -6.87079 -5.94561 -3.94195 3.35887 3.40679 3.43378 4.50552 5.23793 5.26545 5.31096 5.41077 5.61865 5.73583 5.74198 6.11218 6.16047 6.20038 6.22085 6.27674 6.31397 6.34878 6.37405 6.43206 6.54061 6.56440 6.66669 6.79944 6.80822 6.90853 7.04669 7.14069 7.22321 7.24217 7.31750 7.58616 7.81166 7.97137 8.14655 8.53265 9.10240 9.67874 11.14674 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.035259 B = 0.010850 C = 0.009107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.924316 B = 2579.943615 C = 3073.701772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.256 4.256 5 C -0.079 4.079 6 H 0.055 0.945 7 C -0.117 4.117 8 C -0.129 4.129 9 C -0.107 4.107 10 C -0.077 4.077 11 H 0.054 0.946 12 C -0.018 4.018 13 C -0.521 4.521 14 H 0.049 0.951 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.279 1.279 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.013 0.987 29 H 0.212 0.788 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.422 -0.829 6.056 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.052 4.052 3 C -0.197 4.197 4 C -0.309 4.309 5 C -0.098 4.098 6 H 0.074 0.926 7 C -0.154 4.154 8 C -0.167 4.167 9 C -0.144 4.144 10 C -0.096 4.096 11 H 0.073 0.927 12 C -0.053 4.053 13 C -0.559 4.559 14 H 0.068 0.932 15 C -0.144 4.144 16 N -0.539 5.539 17 Si 0.715 3.285 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.205 1.205 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.227 0.773 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.409 -0.778 5.872 9.486 hybrid contribution 0.845 -0.132 -0.033 0.856 sum -6.565 -0.910 5.839 8.833 Atomic orbital electron populations 1.22079 0.96549 1.00627 1.00293 1.20503 0.93370 0.95248 0.96098 1.22015 0.99900 0.95280 1.02472 1.25849 1.12586 0.98497 0.93981 1.22032 0.95946 0.95579 0.96215 0.92628 1.22466 0.97183 0.95839 0.99936 1.22545 0.97122 0.97913 0.99114 1.22420 0.95884 0.97242 0.98898 1.21919 0.93358 0.93733 1.00569 0.92712 1.21183 0.94748 0.98391 0.90934 1.21584 0.93370 1.44634 0.96315 0.93227 1.24949 0.97831 0.95651 0.95979 1.69874 1.35363 1.47103 1.01588 0.86739 0.86433 0.78425 0.76875 1.20463 1.21444 1.20485 0.93609 0.93659 0.93336 0.94216 0.92580 0.92070 0.94141 0.96826 0.77283 0.91640 0.93168 0.92559 0.92840 0.92764 0.91748 0.91716 0.92716 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.56 37.16 0.28 -1.87 16 2 C -0.05 -0.94 0.52 -154.51 -0.08 -1.02 16 3 C -0.14 -2.50 7.88 37.16 0.29 -2.20 16 4 C -0.26 -5.33 5.88 35.91 0.21 -5.11 16 5 C -0.08 -1.40 2.12 -89.50 -0.19 -1.59 16 6 H 0.06 0.95 7.88 -51.93 -0.41 0.54 16 7 C -0.12 -1.84 4.89 -25.07 -0.12 -1.96 16 8 C -0.13 -2.02 6.89 -24.73 -0.17 -2.19 16 9 C -0.11 -2.00 6.20 -24.81 -0.15 -2.16 16 10 C -0.08 -1.57 2.64 -89.24 -0.24 -1.81 16 11 H 0.05 1.16 8.00 -51.93 -0.42 0.74 16 12 C -0.02 -0.43 1.86 -29.13 -0.05 -0.49 16 13 C -0.52 -14.13 8.93 -34.44 -0.31 -14.44 16 14 H 0.05 1.34 7.73 -52.48 -0.41 0.94 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -25.69 13.11 55.43 0.73 -24.96 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H 0.04 0.65 7.43 -51.93 -0.39 0.26 16 22 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 23 H 0.05 0.74 7.12 -51.93 -0.37 0.37 16 24 H 0.04 0.61 7.49 -51.93 -0.39 0.22 16 25 H 0.06 1.02 7.45 -51.93 -0.39 0.64 16 26 H 0.06 1.18 7.30 -51.93 -0.38 0.80 16 27 H 0.04 0.84 6.08 -51.93 -0.32 0.53 16 28 H 0.01 0.27 8.02 -51.93 -0.42 -0.15 16 29 H 0.21 5.04 2.44 -136.82 -0.33 4.71 16 30 H 0.06 1.06 6.16 -51.93 -0.32 0.74 16 31 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.28 7.44 -51.93 -0.39 0.89 16 36 H 0.07 1.64 4.01 -86.91 -0.35 1.29 16 37 H 0.06 1.37 3.45 -51.93 -0.18 1.19 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 271.32 15.07 4.09 4.09 Total: -1.00 -27.06 271.32 -7.50 -34.56 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.66 Total: 3.29 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: -0.63 Total: -33.38 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.73 Total: -24.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.06 -7.50 -34.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.235 kcal (2) G-P(sol) polarization free energy of solvation -27.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds