Wall clock time and date at job start Mon Mar 30 2020 02:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47154 * 2 1 4 4 C 1.52994 * 109.47277 * 239.99649 * 2 1 3 5 5 C 1.53006 * 109.46946 * 119.99662 * 2 1 3 6 6 H 1.09002 * 110.05295 * 277.84872 * 5 2 1 7 7 C 1.54264 * 110.03091 * 39.26440 * 5 2 1 8 8 C 1.54898 * 104.19402 * 142.89289 * 7 5 2 9 9 C 1.54887 * 102.91493 * 321.96461 * 8 7 5 10 10 C 1.53872 * 110.02997 * 156.43184 * 5 2 1 11 11 H 1.09004 * 110.02983 * 121.43302 * 10 5 2 12 12 C 1.53003 * 110.03508 * 359.97438 * 10 5 2 13 13 C 1.50695 * 109.47191 * 162.78700 * 12 10 5 14 14 H 1.08006 * 120.00283 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00344 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99612 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00431 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47340 * 59.99379 * 17 15 13 19 19 H 1.48492 * 109.47241 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46761 * 299.99954 * 17 15 13 21 21 H 1.09003 * 109.47407 * 272.98287 * 1 2 3 22 22 H 1.09007 * 109.47081 * 32.98272 * 1 2 3 23 23 H 1.08997 * 109.47304 * 152.97847 * 1 2 3 24 24 H 1.08999 * 109.47226 * 14.03076 * 3 2 1 25 25 H 1.09001 * 109.46976 * 134.03419 * 3 2 1 26 26 H 1.09002 * 109.46665 * 254.03564 * 3 2 1 27 27 H 1.09004 * 109.47148 * 282.62906 * 4 2 1 28 28 H 1.09004 * 109.47517 * 42.62608 * 4 2 1 29 29 H 1.09000 * 109.47664 * 162.62643 * 4 2 1 30 30 H 1.09004 * 110.48842 * 24.22047 * 7 5 2 31 31 H 1.09001 * 110.49055 * 261.57364 * 7 5 2 32 32 H 1.09000 * 110.75179 * 80.37149 * 8 7 5 33 33 H 1.08997 * 110.75355 * 203.55568 * 8 7 5 34 34 H 1.09005 * 110.48410 * 156.70996 * 9 8 7 35 35 H 1.08997 * 110.48918 * 279.35804 * 9 8 7 36 36 H 1.08995 * 109.47327 * 282.79135 * 12 10 5 37 37 H 1.09002 * 109.46797 * 42.78954 * 12 10 5 38 38 H 0.96994 * 119.99765 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0399 -0.7212 1.2493 6 1 2.0327 -0.0422 2.1020 7 6 1.1581 -1.9517 1.5461 8 6 2.1560 -3.0192 2.0598 9 6 3.4006 -2.7875 1.1674 10 6 3.4649 -1.2494 1.0082 11 1 4.1492 -0.8268 1.7439 12 6 3.9254 -0.8887 -0.4056 13 6 5.4239 -1.0210 -0.4949 14 1 5.9911 -1.3317 0.3701 15 6 6.0709 -0.7453 -1.6808 16 7 5.3802 -0.3673 -2.7342 17 14 7.9283 -0.9100 -1.7917 18 1 8.3204 -2.3092 -1.4859 19 1 8.3754 -0.5585 -3.1634 20 1 8.5658 0.0076 -0.8134 21 1 -0.3634 0.0535 1.0263 22 1 -0.3633 0.8621 -0.5595 23 1 -0.3634 -0.9154 -0.4669 24 1 1.2211 2.1174 0.2491 25 1 2.8346 1.5470 0.7388 26 1 2.4276 1.6908 -0.9881 27 1 1.9493 -1.7985 -1.1092 28 1 1.4482 -0.4160 -2.1122 29 1 3.0858 -0.4634 -1.4162 30 1 0.6655 -2.2963 0.6368 31 1 0.4215 -1.7168 2.3145 32 1 2.3964 -2.8498 3.1094 33 1 1.7572 -4.0229 1.9135 34 1 4.2982 -3.1616 1.6599 35 1 3.2688 -3.2665 0.1972 36 1 3.4577 -1.5627 -1.1232 37 1 3.6373 0.1382 -0.6305 38 1 5.8353 -0.1738 -3.5686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261105880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:40 Heat of formation + Delta-G solvation = 68.725584 kcal Electronic energy + Delta-G solvation = -15345.127876 eV Core-core repulsion = 13190.646937 eV Total energy + Delta-G solvation = -2154.480939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.68230 -35.88819 -35.32632 -32.70404 -28.69356 -28.61513 -27.88702 -27.34111 -23.90351 -21.51141 -20.63216 -19.32071 -18.25727 -16.65232 -16.42046 -15.76934 -15.53253 -14.83938 -14.73791 -14.08416 -13.66650 -13.36453 -13.20904 -13.02692 -12.89671 -12.61202 -12.36236 -12.32171 -12.13449 -11.92305 -11.66230 -11.52263 -11.23437 -11.15768 -10.96711 -10.88649 -10.71982 -10.23359 -8.71350 -8.06318 -6.13238 1.41537 1.42010 1.49691 2.46596 3.24082 3.85263 3.88866 3.94235 4.25262 4.35029 4.37473 4.71358 4.77086 4.82168 4.84558 4.89394 4.91518 4.97045 5.01501 5.03744 5.15558 5.21835 5.23112 5.26949 5.34662 5.41912 5.46599 5.54460 5.66100 5.67507 5.76158 5.82918 5.89264 5.98798 6.26329 6.48650 7.03018 7.51611 9.00685 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.035259 B = 0.010850 C = 0.009107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.924316 B = 2579.943615 C = 3073.701772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C -0.137 4.137 4 C -0.243 4.243 5 C -0.077 4.077 6 H 0.069 0.931 7 C -0.111 4.111 8 C -0.119 4.119 9 C -0.109 4.109 10 C -0.080 4.080 11 H 0.041 0.959 12 C -0.005 4.005 13 C -0.538 4.538 14 H 0.043 0.957 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.946 3.054 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.008 0.992 29 H 0.176 0.824 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 -1.017 7.635 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 C -0.194 4.194 4 C -0.297 4.297 5 C -0.095 4.095 6 H 0.087 0.913 7 C -0.149 4.149 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.099 4.099 11 H 0.060 0.940 12 C -0.040 4.040 13 C -0.577 4.577 14 H 0.062 0.938 15 C -0.191 4.191 16 N -0.567 5.567 17 Si 0.772 3.228 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.199 1.199 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.027 0.973 29 H 0.192 0.808 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.550 -0.970 7.461 11.389 hybrid contribution 1.231 -0.066 -0.561 1.354 sum -7.319 -1.036 6.900 10.112 Atomic orbital electron populations 1.22000 0.93936 1.01105 1.01908 1.20489 0.95457 0.94671 0.94637 1.21982 1.00554 0.96070 1.00792 1.25484 1.10215 0.98349 0.95644 1.22003 0.94335 0.96768 0.96397 0.91294 1.22447 0.97257 0.94486 1.00671 1.22503 0.95087 0.99009 0.99080 1.22379 0.97763 0.95770 0.98790 1.21884 0.95094 0.95132 0.97758 0.93997 1.21012 0.92771 0.97413 0.92756 1.22013 0.95337 1.44199 0.96130 0.93847 1.25686 1.02012 0.95578 0.95803 1.70000 1.36833 1.47972 1.01915 0.85797 0.81520 0.78527 0.76944 1.19958 1.21076 1.19899 0.91380 0.92929 0.93223 0.91362 0.93532 0.94474 0.94854 0.97322 0.80816 0.92092 0.90246 0.90934 0.91046 0.93200 0.93728 0.93754 0.93864 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 7.56 71.98 0.54 -3.16 16 2 C -0.05 -1.82 0.52 -52.18 -0.03 -1.85 16 3 C -0.14 -4.80 7.88 71.98 0.57 -4.23 16 4 C -0.24 -10.30 5.88 71.18 0.42 -9.88 16 5 C -0.08 -2.56 2.12 -10.07 -0.02 -2.59 16 6 H 0.07 2.15 7.88 -2.39 -0.02 2.13 16 7 C -0.11 -3.13 4.89 31.67 0.16 -2.97 16 8 C -0.12 -3.38 6.89 31.89 0.22 -3.16 16 9 C -0.11 -4.05 6.20 31.84 0.20 -3.85 16 10 C -0.08 -3.26 2.64 -9.90 -0.03 -3.29 16 11 H 0.04 1.78 8.00 -2.39 -0.02 1.76 16 12 C 0.00 -0.23 1.86 29.04 0.05 -0.18 16 13 C -0.54 -30.05 8.93 25.60 0.23 -29.82 16 14 H 0.04 2.40 7.73 -2.91 -0.02 2.38 16 15 C 0.01 0.38 5.46 84.65 0.46 0.84 16 16 N -0.93 -54.46 13.11 21.45 0.28 -54.18 16 17 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H 0.07 1.62 7.43 -2.39 -0.02 1.60 16 22 H 0.05 1.39 7.70 -2.38 -0.02 1.37 16 23 H 0.05 1.38 7.12 -2.39 -0.02 1.36 16 24 H 0.07 1.96 7.49 -2.39 -0.02 1.95 16 25 H 0.05 1.68 7.45 -2.39 -0.02 1.66 16 26 H 0.04 1.45 7.30 -2.39 -0.02 1.43 16 27 H 0.03 1.42 6.08 -2.39 -0.01 1.40 16 28 H 0.01 0.33 8.02 -2.38 -0.02 0.31 16 29 H 0.18 8.73 2.44 -82.12 -0.20 8.53 16 30 H 0.06 1.78 6.16 -2.39 -0.01 1.77 16 31 H 0.08 1.82 8.07 -2.39 -0.02 1.80 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.04 1.80 7.44 -2.39 -0.02 1.78 16 36 H 0.04 2.36 4.01 -35.25 -0.14 2.22 16 37 H 0.04 2.26 3.45 -2.39 -0.01 2.25 16 38 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -58.72 271.32 5.77 -52.95 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.69 Total: 18.76 kcal Atomic # 6 Polarization: -66.90 SS G_CDS: 2.77 Total: -64.13 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.28 Total: -54.18 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -58.72 5.77 -52.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.676 kcal (2) G-P(sol) polarization free energy of solvation -58.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds