Wall clock time and date at job start Mon Mar 30 2020 02:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47707 * 2 1 4 4 C 1.53003 * 109.47075 * 239.99679 * 2 1 3 5 5 C 1.52998 * 109.47196 * 120.00283 * 2 1 3 6 6 H 1.09004 * 110.05452 * 301.15009 * 5 2 1 7 7 C 1.54263 * 110.03581 * 179.73539 * 5 2 1 8 8 C 1.54887 * 104.19849 * 217.10484 * 7 5 2 9 9 C 1.54889 * 102.74908 * 37.93681 * 8 7 5 10 10 C 1.53873 * 110.03574 * 62.56528 * 5 2 1 11 11 H 1.09007 * 110.07167 * 359.97438 * 10 5 2 12 12 C 1.52995 * 110.03652 * 238.57244 * 10 5 2 13 13 C 1.50705 * 109.47415 * 176.37634 * 12 10 5 14 14 H 1.08001 * 119.99502 * 0.02562 * 13 12 10 15 15 C 1.37872 * 120.00118 * 180.02562 * 13 12 10 16 16 N 1.31523 * 120.00022 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00113 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46833 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46776 * 239.99997 * 17 15 13 20 20 H 1.48499 * 109.47427 * 119.99921 * 17 15 13 21 21 H 1.09001 * 109.46640 * 300.00256 * 1 2 3 22 22 H 1.09005 * 109.46849 * 59.99772 * 1 2 3 23 23 H 1.08995 * 109.47393 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47504 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.47152 * 300.00042 * 3 2 1 26 26 H 1.09002 * 109.46969 * 59.99691 * 3 2 1 27 27 H 1.09002 * 109.47365 * 294.19274 * 4 2 1 28 28 H 1.08999 * 109.47044 * 54.18751 * 4 2 1 29 29 H 1.09001 * 109.47521 * 174.18863 * 4 2 1 30 30 H 1.09007 * 110.48692 * 98.42340 * 7 5 2 31 31 H 1.09003 * 110.48545 * 335.78265 * 7 5 2 32 32 H 1.09004 * 110.75337 * 279.62475 * 8 7 5 33 33 H 1.09001 * 110.91862 * 156.33105 * 8 7 5 34 34 H 1.08998 * 110.48635 * 203.37608 * 9 8 7 35 35 H 1.09006 * 110.59368 * 80.79518 * 9 8 7 36 36 H 1.09003 * 109.46941 * 56.37764 * 12 10 5 37 37 H 1.08998 * 109.47335 * 296.37657 * 12 10 5 38 38 H 0.96995 * 119.99555 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.6652 -0.2269 2.1455 7 6 3.5825 -0.7347 1.2590 8 6 3.9467 -2.1203 1.8476 9 6 2.8713 -3.0477 1.2292 10 6 1.5878 -2.1920 1.2303 11 1 1.0044 -2.3925 0.3316 12 6 0.7537 -2.4999 2.4754 13 6 0.2435 -3.9160 2.4007 14 1 0.4900 -4.5346 1.5504 15 6 -0.5378 -4.4218 3.4179 16 7 -0.8384 -3.6683 4.4531 17 14 -1.1695 -6.1773 3.3257 18 1 -0.6946 -6.8089 2.0684 19 1 -2.6544 -6.1707 3.3456 20 1 -0.6623 -6.9478 4.4895 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4423 -0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.7640 -1.7746 -1.1987 28 1 1.5941 -0.2712 -2.1362 29 1 3.1250 -0.6321 -1.3029 30 1 3.9669 0.0629 1.8948 31 1 3.9713 -0.6367 0.2454 32 1 3.8694 -2.1105 2.9349 33 1 4.9456 -2.4253 1.5357 34 1 2.7367 -3.9382 1.8432 35 1 3.1439 -3.3253 0.2110 36 1 -0.0903 -1.8119 2.5266 37 1 1.3722 -2.3830 3.3652 38 1 -0.5100 -2.7569 4.5011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261105884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:43 Heat of formation + Delta-G solvation = -65.143228 kcal Electronic energy + Delta-G solvation = -14960.655588 eV Core-core repulsion = 12800.369662 eV Total energy + Delta-G solvation = -2160.285926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74109 -36.42433 -35.10365 -31.74512 -28.88619 -28.18993 -28.11075 -26.95541 -24.59997 -21.90164 -20.83314 -19.08590 -18.54883 -16.86669 -16.32236 -15.65063 -15.34063 -14.92381 -14.59141 -14.49049 -14.05835 -13.56112 -13.21199 -13.15652 -13.02410 -12.61233 -12.49459 -12.38842 -12.17204 -11.96290 -11.91830 -11.72958 -11.42422 -11.21374 -11.17080 -11.09505 -10.94315 -10.51012 -10.41324 -8.65795 -6.34231 1.49066 1.59144 1.75097 2.55789 3.18167 3.74368 3.77157 3.79122 4.16837 4.19856 4.25014 4.61721 4.64186 4.67021 4.75411 4.79468 4.80745 4.89127 4.90857 4.94854 4.97519 5.06441 5.07079 5.12008 5.22073 5.27581 5.28659 5.35743 5.46589 5.52935 5.54381 5.61626 5.69348 5.80658 6.07645 6.23454 6.62957 7.46957 8.74261 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.037798 B = 0.008882 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.592739 B = 3151.764215 C = 3399.883440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.139 4.139 5 C -0.079 4.079 6 H 0.039 0.961 7 C -0.109 4.109 8 C -0.121 4.121 9 C -0.113 4.113 10 C -0.066 4.066 11 H 0.056 0.944 12 C 0.025 3.975 13 C -0.601 4.601 14 H 0.048 0.952 15 C -0.045 4.045 16 N -0.943 5.943 17 Si 1.119 2.881 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.279 1.279 21 H 0.037 0.963 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.068 0.932 36 H -0.024 1.024 37 H -0.022 1.022 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.289 7.035 -10.818 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.060 4.060 3 C -0.191 4.191 4 C -0.196 4.196 5 C -0.097 4.097 6 H 0.058 0.942 7 C -0.146 4.146 8 C -0.158 4.158 9 C -0.151 4.151 10 C -0.085 4.085 11 H 0.074 0.926 12 C -0.012 4.012 13 C -0.639 4.639 14 H 0.067 0.933 15 C -0.241 4.241 16 N -0.581 5.581 17 Si 0.941 3.059 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.205 1.205 21 H 0.057 0.943 22 H 0.088 0.912 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.087 0.913 36 H -0.005 1.005 37 H -0.004 1.004 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.395 5.922 -10.034 13.800 hybrid contribution 0.400 1.105 -0.105 1.180 sum 7.795 7.026 -10.139 14.592 Atomic orbital electron populations 1.21887 0.95954 1.00792 1.01173 1.20523 0.94535 0.96127 0.94776 1.21834 1.01567 0.94074 1.01647 1.21940 1.01583 0.99843 0.96248 1.21882 0.96245 0.94704 0.96916 0.94224 1.22457 0.93960 0.96361 1.01805 1.22452 0.98571 0.95814 0.98964 1.22314 0.94755 0.97928 1.00060 1.21646 0.95731 0.94056 0.97046 0.92575 1.19188 0.93118 0.95005 0.93852 1.22499 1.34149 0.99528 1.07735 0.93332 1.27397 0.95149 1.09167 0.92402 1.70860 1.46115 1.09583 1.31558 0.82917 0.76339 0.70142 0.76533 1.19388 1.20533 1.20485 0.94346 0.91182 0.94599 0.91400 0.91573 0.93635 0.93733 0.91791 0.91161 0.91453 0.89233 0.94024 0.89913 0.94005 0.91298 1.00547 1.00371 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.25 71.98 0.59 -3.81 16 2 C -0.06 -1.67 0.53 -52.18 -0.03 -1.70 16 3 C -0.13 -3.01 8.24 71.98 0.59 -2.41 16 4 C -0.14 -3.44 7.90 71.98 0.57 -2.87 16 5 C -0.08 -2.69 1.95 -10.07 -0.02 -2.71 16 6 H 0.04 1.54 7.67 -2.38 -0.02 1.52 16 7 C -0.11 -3.04 5.08 31.67 0.16 -2.88 16 8 C -0.12 -3.84 6.91 31.88 0.22 -3.62 16 9 C -0.11 -4.30 6.16 31.67 0.20 -4.10 16 10 C -0.07 -2.78 1.39 -10.07 -0.01 -2.79 16 11 H 0.06 2.41 5.01 -2.38 -0.01 2.40 16 12 C 0.03 1.37 3.49 29.85 0.10 1.47 16 13 C -0.60 -35.35 8.11 25.60 0.21 -35.14 16 14 H 0.05 2.80 7.65 -2.91 -0.02 2.77 16 15 C -0.04 -2.69 5.46 84.65 0.46 -2.23 16 16 N -0.94 -60.77 13.65 21.45 0.29 -60.48 16 17 Si 1.12 52.29 29.90 68.60 2.05 54.34 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.03 1.31 6.64 -2.39 -0.02 1.29 16 24 H 0.07 1.34 7.10 -2.39 -0.02 1.32 16 25 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 1.27 6.16 -2.39 -0.01 1.25 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.49 6.30 -2.39 -0.02 1.48 16 30 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.09 2.09 5.59 -2.39 -0.01 2.07 16 32 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.85 7.07 -2.39 -0.02 1.84 16 35 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 36 H -0.02 -1.40 8.01 -2.39 -0.02 -1.42 16 37 H -0.02 -1.29 8.01 -2.39 -0.02 -1.31 16 38 H 0.25 16.62 7.22 -92.71 -0.67 15.95 16 Total: -1.00 -66.67 284.04 6.48 -60.19 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.09 Total: 8.74 kcal Atomic # 6 Polarization: -65.83 SS G_CDS: 3.04 Total: -62.78 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.29 Total: -60.48 kcal Atomic # 14 Polarization: 52.29 SS G_CDS: 2.05 Total: 54.34 kcal Total: -66.67 6.48 -60.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.955 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds