Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47119 * 2 1 4 4 C 1.52998 * 109.47230 * 120.00261 * 2 1 3 5 5 H 1.09003 * 109.47046 * 56.04800 * 4 2 1 6 6 C 1.53004 * 109.47207 * 296.04786 * 4 2 1 7 7 C 1.52998 * 109.47207 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46892 * 60.00060 * 7 6 4 9 9 C 1.52995 * 109.47277 * 299.99797 * 8 7 6 10 10 C 1.52998 * 109.46993 * 60.00265 * 9 8 7 11 11 H 1.09003 * 109.47046 * 60.00016 * 10 9 8 12 12 C 1.53009 * 109.46974 * 179.97438 * 10 9 8 13 13 C 1.50696 * 109.46948 * 294.85322 * 12 10 9 14 14 H 1.07999 * 120.00380 * 0.02562 * 13 12 10 15 15 C 1.37885 * 119.99572 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00151 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99911 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47355 * 60.00022 * 17 15 13 19 19 H 1.48504 * 109.47274 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47314 * 299.99955 * 17 15 13 21 21 H 1.08998 * 109.47789 * 306.01633 * 1 2 3 22 22 H 1.09008 * 109.47264 * 66.02030 * 1 2 3 23 23 H 1.09007 * 109.47133 * 186.01392 * 1 2 3 24 24 H 1.09003 * 109.47114 * 240.00692 * 2 1 3 25 25 H 1.09003 * 109.46562 * 60.00354 * 3 2 1 26 26 H 1.08992 * 109.47189 * 179.97438 * 3 2 1 27 27 H 1.08991 * 109.47287 * 300.00370 * 3 2 1 28 28 H 1.09002 * 109.46686 * 300.00261 * 6 4 2 29 29 H 1.09004 * 109.46823 * 59.99705 * 6 4 2 30 30 H 1.08999 * 109.46931 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47046 * 300.00014 * 7 6 4 32 32 H 1.09003 * 109.46654 * 180.02562 * 8 7 6 33 33 H 1.08993 * 109.47334 * 60.00153 * 8 7 6 34 34 H 1.09002 * 109.47493 * 299.99912 * 9 8 7 35 35 H 1.09004 * 109.46955 * 180.02562 * 9 8 7 36 36 H 1.09005 * 109.46868 * 54.85554 * 12 10 9 37 37 H 1.08996 * 109.46910 * 174.85396 * 12 10 9 38 38 H 0.97004 * 120.00156 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6199 -1.7265 1.2852 6 6 1.6127 0.0550 2.4965 7 6 2.1222 -0.6666 3.7457 8 6 3.6489 -0.7538 3.6973 9 6 4.0761 -1.5301 2.4500 10 6 3.5667 -0.8084 1.2008 11 1 3.9871 0.1966 1.1650 12 6 3.9945 -1.5845 -0.0466 13 6 5.4968 -1.5617 -0.1616 14 1 6.0876 -1.0457 0.5808 15 6 6.1174 -2.2005 -1.2143 16 7 5.3981 -2.8292 -2.1181 17 14 7.9797 -2.1729 -1.3566 18 1 8.5776 -2.8027 -0.1521 19 1 8.3949 -2.9260 -2.5673 20 1 8.4472 -0.7674 -1.4640 21 1 -0.3634 0.6042 0.8312 22 1 -0.3634 0.4177 -0.9390 23 1 -0.3634 -1.0221 0.1077 24 1 1.8933 -0.5137 -0.8901 25 1 1.6766 1.9563 0.8901 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 2.0328 1.0602 2.4604 29 1 0.5250 0.1168 2.5312 30 1 1.8175 -0.1138 4.6343 31 1 1.7018 -1.6717 3.7816 32 1 4.0118 -1.2683 4.5871 33 1 4.0693 0.2512 3.6614 34 1 3.6558 -2.5352 2.4859 35 1 5.1639 -1.5925 2.4158 36 1 3.6516 -2.6162 0.0321 37 1 3.5553 -1.1220 -0.9305 38 1 5.8346 -3.2783 -2.8589 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261129070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = -52.581328 kcal Electronic energy + Delta-G solvation = -14880.012914 eV Core-core repulsion = 12720.271713 eV Total energy + Delta-G solvation = -2159.741201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.99821 -34.44622 -33.29075 -31.06695 -28.83947 -26.78387 -26.51256 -23.24139 -22.78239 -20.15906 -19.66810 -18.11752 -16.22412 -14.96553 -14.51834 -14.13975 -13.88494 -13.73496 -13.30564 -12.69880 -12.39399 -12.05231 -11.82040 -11.62566 -11.41936 -11.13686 -10.93511 -10.79384 -10.67588 -10.56381 -10.35891 -10.23586 -10.03963 -9.77333 -9.49519 -9.31755 -8.74546 -8.69950 -8.24100 -5.92601 -3.93102 3.36344 3.40885 3.43285 4.51339 5.17215 5.26185 5.28744 5.42479 5.52287 5.56485 5.63109 5.86160 5.98270 6.05179 6.09266 6.14436 6.15756 6.18106 6.26713 6.27427 6.37546 6.43028 6.52172 6.63510 6.67013 6.75380 6.87281 6.93103 6.96395 7.20642 7.25448 7.34533 7.79337 7.96461 8.09655 8.53545 9.13608 9.69641 11.18612 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.031577 B = 0.009627 C = 0.008091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.522504 B = 2907.929175 C = 3459.900917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.075 4.075 5 H 0.060 0.940 6 C -0.115 4.115 7 C -0.116 4.116 8 C -0.120 4.120 9 C -0.105 4.105 10 C -0.075 4.075 11 H 0.057 0.943 12 C 0.026 3.974 13 C -0.512 4.512 14 H 0.053 0.947 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.012 0.988 37 H 0.021 0.979 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 5.464 7.725 12.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.094 4.094 5 H 0.079 0.921 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.158 4.158 9 C -0.142 4.142 10 C -0.093 4.093 11 H 0.075 0.925 12 C -0.011 4.011 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.715 3.285 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.039 0.961 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.527 5.359 7.562 11.940 hybrid contribution 1.074 -0.100 -0.183 1.094 sum -6.453 5.258 7.379 11.124 Atomic orbital electron populations 1.21877 0.96587 1.01057 1.00652 1.21191 0.94175 0.96420 0.99642 1.21892 1.02044 0.96127 1.00237 1.21212 0.97316 0.98007 0.92835 0.92148 1.21681 0.99353 0.99379 0.94785 1.21515 0.96438 1.00167 0.97271 1.21593 0.95238 1.00414 0.98518 1.21503 1.01345 0.98130 0.93245 1.21232 0.91900 0.99536 0.96670 0.92465 1.19193 0.95578 0.94824 0.91484 1.21249 0.92361 1.32754 1.08689 0.92844 1.25005 0.97758 0.95698 0.96018 1.69954 1.35067 1.35306 1.13321 0.86750 0.86437 0.78028 0.77316 1.20378 1.21419 1.20372 0.93252 0.93508 0.93165 0.89935 0.93299 0.91800 0.93811 0.92122 0.92942 0.93280 0.92580 0.93258 0.92698 0.93096 0.91446 0.96983 0.96087 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.77 37.15 0.33 -1.69 16 2 C -0.10 -1.60 2.47 -90.62 -0.22 -1.82 16 3 C -0.15 -2.28 8.47 37.16 0.31 -1.96 16 4 C -0.08 -1.30 1.50 -90.62 -0.14 -1.43 16 5 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 6 C -0.11 -1.67 4.48 -26.73 -0.12 -1.79 16 7 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 8 C -0.12 -1.86 5.92 -26.73 -0.16 -2.02 16 9 C -0.10 -2.00 5.01 -26.73 -0.13 -2.13 16 10 C -0.07 -1.52 1.40 -90.62 -0.13 -1.65 16 11 H 0.06 1.19 6.54 -51.93 -0.34 0.85 16 12 C 0.03 0.66 4.24 -27.88 -0.12 0.54 16 13 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 14 H 0.05 1.46 7.07 -52.49 -0.37 1.09 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H 0.05 0.62 6.84 -51.93 -0.36 0.27 16 22 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.61 6.12 -51.93 -0.32 1.29 16 25 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 26 H 0.06 1.11 6.53 -51.93 -0.34 0.77 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.88 6.36 -51.93 -0.33 0.55 16 29 H 0.05 0.70 6.67 -51.93 -0.35 0.35 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.40 6.96 -51.93 -0.36 1.04 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.02 0.56 6.09 -51.93 -0.32 0.25 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 281.47 15.07 4.24 4.24 Total: -1.00 -28.78 281.47 -7.73 -36.51 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.77 Total: -2.41 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -0.92 Total: -28.87 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.78 -7.73 -36.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.069 kcal (2) G-P(sol) polarization free energy of solvation -28.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds