Wall clock time and date at job start Mon Mar 30 2020 02:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 110.99732 * 2 1 4 4 C 1.52997 * 117.50161 * 303.95578 * 3 2 1 5 5 C 1.52993 * 60.00151 * 252.50774 * 4 3 2 6 6 C 1.46898 * 111.00196 * 123.95754 * 2 1 3 7 7 H 1.09006 * 110.64013 * 300.64471 * 6 2 1 8 8 C 1.55160 * 110.72114 * 177.50587 * 6 2 1 9 9 C 1.54909 * 101.58115 * 206.13413 * 8 6 2 10 10 N 1.47417 * 104.83325 * 37.00410 * 9 8 6 11 11 C 1.36940 * 125.64812 * 155.91575 * 10 9 8 12 12 H 1.07995 * 119.99895 * 333.18347 * 11 10 9 13 13 C 1.38817 * 120.00164 * 153.18224 * 11 10 9 14 14 N 1.31618 * 119.99922 * 157.36275 * 13 11 10 15 15 Si 1.86797 * 119.99654 * 337.36668 * 13 11 10 16 16 H 1.48498 * 109.47115 * 84.78332 * 15 13 11 17 17 H 1.48504 * 109.46978 * 204.78220 * 15 13 11 18 18 H 1.48504 * 109.47292 * 324.77942 * 15 13 11 19 19 C 1.47021 * 108.70865 * 335.87617 * 10 9 8 20 20 H 1.08996 * 109.47906 * 63.56012 * 1 2 3 21 21 H 1.09003 * 109.47147 * 183.55757 * 1 2 3 22 22 H 1.09004 * 109.47510 * 303.55162 * 1 2 3 23 23 H 1.09000 * 115.56143 * 89.64429 * 3 2 1 24 24 H 1.09004 * 117.50142 * 145.02007 * 4 3 2 25 25 H 1.09000 * 117.49658 * 359.97438 * 4 3 2 26 26 H 1.09001 * 117.49613 * 107.48368 * 5 4 3 27 27 H 1.09001 * 117.50448 * 252.51037 * 5 4 3 28 28 H 1.09002 * 111.00166 * 324.20562 * 8 6 2 29 29 H 1.08998 * 111.00425 * 88.02119 * 8 6 2 30 30 H 1.08995 * 110.36355 * 155.84597 * 9 8 6 31 31 H 1.09003 * 110.36219 * 278.05820 * 9 8 6 32 32 H 0.96995 * 119.99637 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.87957 * 241.64511 * 19 10 9 34 34 H 1.08993 * 109.88980 * 120.47018 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.5408 2.3026 -1.1257 5 6 2.9691 1.7545 -1.1162 6 6 1.9954 -0.7660 1.1375 7 1 1.6477 -0.3425 2.0798 8 6 3.5457 -0.8144 1.0963 9 6 3.8364 -2.1274 1.8653 10 7 2.7570 -3.0473 1.4630 11 6 2.8211 -4.4149 1.4937 12 1 3.7752 -4.9129 1.4048 13 6 1.6596 -5.1610 1.6392 14 7 1.6271 -6.4134 1.2357 15 14 0.1427 -4.3875 2.4074 16 1 -0.6216 -3.6561 1.3653 17 1 -0.7123 -5.4509 2.9935 18 1 0.5562 -3.4407 3.4741 19 6 1.6000 -2.2534 1.0240 20 1 -0.3635 0.4575 -0.9201 21 1 -0.3633 -1.0257 0.0638 22 1 -0.3634 0.5680 0.8565 23 1 2.1582 1.8127 0.9833 24 1 1.4046 3.3565 -0.8829 25 1 0.8515 1.8975 -1.8665 26 1 3.2192 0.9887 -1.8505 27 1 3.7727 2.4476 -0.8672 28 1 3.9076 -0.8746 0.0699 29 1 3.9772 0.0441 1.6109 30 1 4.8065 -2.5304 1.5745 31 1 3.8062 -1.9517 2.9407 32 1 0.8156 -6.9349 1.3377 33 1 0.7440 -2.4595 1.6665 34 1 1.3562 -2.4942 -0.0106 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137379.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:25 Heat of formation + Delta-G solvation = 44.771683 kcal Electronic energy + Delta-G solvation = -14491.546414 eV Core-core repulsion = 12232.486412 eV Total energy + Delta-G solvation = -2259.060001 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29998 -38.19180 -35.17109 -34.02859 -31.42894 -29.21609 -27.31383 -25.43108 -23.07349 -22.37359 -21.98897 -20.86675 -19.04807 -17.72170 -17.37443 -16.38440 -15.86626 -15.48092 -15.03481 -14.86324 -14.32263 -14.19933 -13.76840 -13.61218 -13.15679 -12.92280 -12.68870 -12.45561 -12.28223 -12.06509 -11.88099 -11.78213 -11.43385 -11.18102 -11.01235 -10.71802 -9.28489 -8.99747 -8.24889 -5.54223 1.24388 1.31724 1.43171 2.36678 2.68462 2.93519 3.01369 3.42595 3.68567 3.91050 4.06893 4.15217 4.16704 4.31273 4.33258 4.47045 4.56043 4.63436 4.79617 4.83639 4.84561 4.95695 4.99880 5.02611 5.04858 5.17725 5.38189 5.39076 5.72394 6.02928 6.09744 6.22175 6.74559 7.49281 8.10608 8.95927 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043859 B = 0.009676 C = 0.008598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.250587 B = 2892.985959 C = 3255.765082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.519 5.519 3 C -0.008 4.008 4 C -0.162 4.162 5 C -0.159 4.159 6 C 0.085 3.915 7 H 0.054 0.946 8 C -0.098 4.098 9 C 0.121 3.879 10 N -0.627 5.627 11 C -0.240 4.240 12 H 0.057 0.943 13 C -0.029 4.029 14 N -0.950 5.950 15 Si 0.949 3.051 16 H -0.274 1.274 17 H -0.303 1.303 18 H -0.274 1.274 19 C 0.131 3.869 20 H 0.086 0.914 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.097 0.903 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.008 0.992 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 20.047 -1.912 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.243 5.243 3 C -0.116 4.116 4 C -0.200 4.200 5 C -0.197 4.197 6 C -0.024 4.024 7 H 0.072 0.928 8 C -0.137 4.137 9 C -0.003 4.003 10 N -0.355 5.355 11 C -0.369 4.369 12 H 0.075 0.925 13 C -0.225 4.225 14 N -0.596 5.596 15 Si 0.779 3.221 16 H -0.200 1.200 17 H -0.231 1.231 18 H -0.200 1.200 19 C 0.006 3.994 20 H 0.104 0.896 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.114 0.886 24 H 0.133 0.867 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.130 0.870 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.497 19.593 -2.349 19.740 hybrid contribution -1.142 -0.289 1.121 1.626 sum -1.639 19.305 -1.228 19.413 Atomic orbital electron populations 1.22379 0.86928 1.01098 1.01888 1.61752 1.08071 1.12439 1.42051 1.22439 1.06008 0.88313 0.94837 1.23120 0.98088 0.98890 0.99882 1.23088 0.93365 1.02709 1.00548 1.22476 0.96716 0.91543 0.91698 0.92835 1.22656 0.92975 0.96881 1.01162 1.21899 0.91825 0.89864 0.96718 1.44820 1.14004 1.01339 1.75316 1.18586 0.94512 0.80162 1.43663 0.92498 1.25782 1.00857 0.95643 1.00168 1.69965 1.29551 1.10823 1.49251 0.85842 0.80131 0.76504 0.79658 1.20047 1.23095 1.20002 1.21592 0.89979 0.91187 0.96611 0.89577 0.93465 0.94624 0.88561 0.86701 0.88902 0.89687 0.86956 0.90737 0.88215 0.93278 0.94962 0.92674 0.97470 0.95465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.21 127.69 1.18 1.85 16 2 N -0.52 -15.34 4.73 -864.87 -4.09 -19.43 16 3 C -0.01 -0.17 4.48 44.91 0.20 0.03 16 4 C -0.16 -2.84 9.80 30.59 0.30 -2.54 16 5 C -0.16 -3.07 10.46 30.59 0.32 -2.75 16 6 C 0.08 2.89 2.61 46.11 0.12 3.01 16 7 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 8 C -0.10 -3.09 5.86 31.99 0.19 -2.91 16 9 C 0.12 4.85 7.23 86.86 0.63 5.48 16 10 N -0.63 -31.88 3.08 -692.02 -2.13 -34.01 16 11 C -0.24 -14.49 10.52 84.03 0.88 -13.61 16 12 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 13 C -0.03 -1.77 5.42 84.86 0.46 -1.31 16 14 N -0.95 -61.59 13.97 21.65 0.30 -61.29 16 15 Si 0.95 49.15 24.66 68.60 1.69 50.84 16 16 H -0.27 -13.53 6.73 99.48 0.67 -12.86 16 17 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 18 H -0.27 -13.82 7.10 99.48 0.71 -13.11 16 19 C 0.13 5.97 4.23 86.73 0.37 6.33 16 20 H 0.09 1.98 7.04 -2.39 -0.02 1.96 16 21 H 0.05 1.51 6.95 -2.39 -0.02 1.50 16 22 H 0.04 0.87 8.14 -2.38 -0.02 0.86 16 23 H 0.10 1.98 8.08 -2.39 -0.02 1.96 16 24 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.09 1.72 7.30 -2.39 -0.02 1.70 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 33 H 0.01 0.38 3.50 -2.39 -0.01 0.37 16 34 H 0.03 1.35 7.86 -2.39 -0.02 1.33 16 Total: -1.00 -69.04 267.57 1.43 -67.61 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: 1.02 Total: 2.68 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 4.64 Total: -6.41 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -5.92 Total: -114.73 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 1.69 Total: 50.84 kcal Total: -69.04 1.43 -67.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137379.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.384 kcal (2) G-P(sol) polarization free energy of solvation -69.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds