Wall clock time and date at job start Mon Mar 30 2020 02:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48537 * 110.99637 * 2 1 4 4 C 1.54939 * 103.22223 * 159.72011 * 3 2 1 5 5 C 1.54596 * 102.92676 * 322.58846 * 4 3 2 6 6 H 1.09000 * 110.30830 * 263.04551 * 5 4 3 7 7 N 1.46499 * 110.39442 * 140.91555 * 5 4 3 8 8 C 1.36932 * 119.99823 * 302.78379 * 7 5 4 9 9 H 1.08003 * 120.00278 * 308.07262 * 8 7 5 10 10 C 1.38813 * 120.00151 * 128.08210 * 8 7 5 11 11 N 1.31616 * 119.99560 * 347.82003 * 10 8 7 12 12 Si 1.86801 * 120.00330 * 167.81984 * 10 8 7 13 13 H 1.48504 * 109.46842 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46881 * 119.99808 * 12 10 8 15 15 H 1.48496 * 109.47149 * 239.99981 * 12 10 8 16 16 C 1.46495 * 119.99784 * 122.77884 * 7 5 4 17 17 C 1.53004 * 117.49812 * 181.86952 * 16 7 5 18 18 C 1.53009 * 117.49517 * 113.21423 * 16 7 5 19 19 C 1.47896 * 111.00110 * 117.39846 * 2 1 3 20 20 H 1.08996 * 109.47173 * 302.59756 * 1 2 3 21 21 H 1.08996 * 109.47260 * 62.60457 * 1 2 3 22 22 H 1.09001 * 109.46918 * 182.60234 * 1 2 3 23 23 H 1.08999 * 110.66392 * 41.29209 * 3 2 1 24 24 H 1.08998 * 110.81226 * 278.22478 * 3 2 1 25 25 H 1.09006 * 110.72416 * 204.22766 * 4 3 2 26 26 H 1.09009 * 110.72225 * 80.94882 * 4 3 2 27 27 H 0.97006 * 119.99455 * 175.30332 * 11 10 8 28 28 H 1.09001 * 115.55549 * 327.55063 * 16 7 5 29 29 H 1.08996 * 117.49381 * 0.02562 * 17 16 7 30 30 H 1.09004 * 117.49464 * 145.02268 * 17 16 7 31 31 H 1.08995 * 117.49908 * 214.97585 * 18 16 7 32 32 H 1.09005 * 117.49775 * 359.97438 * 18 16 7 33 33 H 1.09003 * 109.91719 * 94.80462 * 19 2 1 34 34 H 1.08997 * 109.91605 * 333.51307 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 0.5228 5 6 3.2983 0.1053 1.5930 6 1 3.2136 0.5485 2.5853 7 7 4.4387 -0.8129 1.5428 8 6 4.7367 -1.4715 0.3798 9 1 3.9696 -2.0297 -0.1365 10 6 6.0246 -1.4219 -0.1356 11 7 6.8941 -0.5602 0.3479 12 14 6.5238 -2.5781 -1.5152 13 1 5.3719 -3.4422 -1.8781 14 1 6.9394 -1.7847 -2.6998 15 1 7.6568 -3.4259 -1.0650 16 6 5.2603 -1.0264 2.7367 17 6 6.4629 -1.9636 2.6083 18 6 5.2212 -2.4130 3.3824 19 6 1.9991 -0.6354 1.2258 20 1 -0.3633 0.5536 0.8657 21 1 -0.3633 0.4728 -0.9124 22 1 -0.3633 -1.0266 0.0467 23 1 1.4237 2.0204 0.6730 24 1 2.0039 1.8005 -1.0084 25 1 3.8122 2.1353 0.9717 26 1 4.1115 0.8837 -0.2788 27 1 7.8125 -0.5711 0.0359 28 1 5.3611 -0.1659 3.3982 29 1 6.6430 -2.4208 1.6355 30 1 7.3548 -1.7197 3.1856 31 1 5.2967 -2.4647 4.4685 32 1 4.5838 -3.1662 2.9191 33 1 2.2123 -1.6874 1.0364 34 1 1.2758 -0.5404 2.0357 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261145865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:46 Heat of formation + Delta-G solvation = 46.065425 kcal Electronic energy + Delta-G solvation = -14779.349853 eV Core-core repulsion = 12520.345953 eV Total energy + Delta-G solvation = -2259.003900 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.97331 -38.13573 -34.52125 -33.49444 -31.10770 -28.85750 -26.71437 -25.47117 -22.73043 -21.89938 -21.86296 -21.17962 -18.17346 -17.28047 -16.59617 -16.39360 -15.94456 -15.27261 -14.93393 -14.58837 -13.90424 -13.69976 -13.27813 -13.18080 -12.89149 -12.65517 -12.48777 -12.23499 -12.02716 -11.98913 -11.90571 -11.85515 -11.28478 -11.05227 -10.63424 -10.11112 -9.18052 -8.26288 -7.62774 -5.54471 1.41766 1.47280 1.55420 2.50527 3.25811 3.29904 3.50303 3.62876 4.10293 4.12791 4.40957 4.46481 4.48455 4.59426 4.65632 4.71663 4.75625 4.82946 4.85512 5.01040 5.06289 5.12465 5.16004 5.24442 5.43530 5.55559 5.65633 5.80168 5.84787 6.11935 6.33043 6.65220 7.33001 7.88683 8.50867 9.19838 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028284 B = 0.012827 C = 0.010558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.712225 B = 2182.400862 C = 2651.440633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.047 3.953 4 C -0.124 4.124 5 C 0.162 3.838 6 H 0.065 0.935 7 N -0.558 5.558 8 C -0.256 4.256 9 H 0.040 0.960 10 C 0.000 4.000 11 N -0.895 5.895 12 Si 0.932 3.068 13 H -0.274 1.274 14 H -0.291 1.291 15 H -0.286 1.286 16 C 0.133 3.867 17 C -0.160 4.160 18 C -0.218 4.218 19 C 0.041 3.959 20 H 0.034 0.966 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.248 0.752 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.448 2.110 3.051 9.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.081 4.081 4 C -0.164 4.164 5 C 0.054 3.946 6 H 0.084 0.916 7 N -0.276 5.276 8 C -0.387 4.387 9 H 0.057 0.943 10 C -0.200 4.200 11 N -0.535 5.535 12 Si 0.761 3.239 13 H -0.199 1.199 14 H -0.218 1.218 15 H -0.213 1.213 16 C 0.025 3.975 17 C -0.198 4.198 18 C -0.259 4.259 19 C -0.088 4.088 20 H 0.053 0.947 21 H 0.094 0.906 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.155 1.929 2.484 8.740 hybrid contribution 0.502 -0.273 -0.186 0.601 sum -7.653 1.656 2.298 8.160 Atomic orbital electron populations 1.22522 0.87011 1.01988 1.01303 1.64597 1.08815 1.15455 1.37744 1.23112 0.94687 0.89512 1.00778 1.22741 0.96027 0.98026 0.99567 1.21392 0.87343 0.89463 0.96354 0.91635 1.43382 1.30466 1.47502 1.06236 1.18673 0.94687 1.25054 1.00251 0.94270 1.25882 0.98832 0.97399 0.97897 1.70218 1.03336 1.34568 1.45418 0.85795 0.77953 0.79605 0.80578 1.19871 1.21802 1.21287 1.20829 0.96672 0.90106 0.89916 1.22807 0.91233 1.05432 1.00371 1.23470 1.02529 1.01892 0.98024 1.23146 0.96148 0.99340 0.90188 0.94715 0.90578 0.91608 0.92592 0.90512 0.92276 0.93082 0.94230 0.89911 0.90281 0.91065 0.88625 0.91279 0.92617 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.40 127.69 1.20 1.73 16 2 N -0.54 -19.10 5.55 -909.16 -5.05 -24.15 16 3 C 0.05 1.55 6.56 86.65 0.57 2.11 16 4 C -0.12 -5.03 6.64 31.80 0.21 -4.82 16 5 C 0.16 6.71 3.53 45.87 0.16 6.87 16 6 H 0.07 2.50 7.96 -2.39 -0.02 2.48 16 7 N -0.56 -27.08 2.60 -649.40 -1.69 -28.78 16 8 C -0.26 -13.75 7.01 84.03 0.59 -13.16 16 9 H 0.04 2.25 7.18 -2.91 -0.02 2.23 16 10 C 0.00 -0.01 3.20 84.86 0.27 0.27 16 11 N -0.89 -50.39 11.33 21.65 0.25 -50.14 16 12 Si 0.93 44.60 29.52 68.60 2.03 46.63 16 13 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 14 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 15 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 16 C 0.13 6.10 5.97 45.00 0.27 6.37 16 17 C -0.16 -7.45 8.26 30.62 0.25 -7.20 16 18 C -0.22 -8.94 10.38 30.62 0.32 -8.62 16 19 C 0.04 1.56 6.14 86.45 0.53 2.09 16 20 H 0.03 0.81 8.00 -2.39 -0.02 0.79 16 21 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.06 1.56 7.96 -2.39 -0.02 1.55 16 24 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 26 H 0.05 2.55 7.07 -2.38 -0.02 2.53 16 27 H 0.25 13.68 8.32 -92.70 -0.77 12.90 16 28 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 29 H 0.08 4.18 5.12 -2.39 -0.01 4.16 16 30 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 33 H 0.06 2.43 6.96 -2.39 -0.02 2.41 16 34 H 0.05 1.54 7.73 -2.39 -0.02 1.52 16 Total: -1.00 -58.63 268.87 0.96 -57.67 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.05 Total: 13.13 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.37 Total: -14.36 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -6.49 Total: -103.07 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -58.63 0.96 -57.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.740 kcal (2) G-P(sol) polarization free energy of solvation -58.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds