Wall clock time and date at job start Mon Mar 30 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.52997 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46975 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47245 * 60.00405 * 6 5 4 8 8 C 1.52996 * 109.47245 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46911 * 294.99513 * 8 7 6 10 10 H 1.07995 * 120.00176 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99908 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99729 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00162 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47125 * 90.00227 * 13 11 9 15 15 H 1.48499 * 109.47560 * 210.00644 * 13 11 9 16 16 H 1.48502 * 109.47185 * 330.00594 * 13 11 9 17 17 C 1.53000 * 109.46632 * 300.00027 * 7 6 5 18 18 C 1.52996 * 109.47518 * 59.99681 * 17 7 6 19 19 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 21 21 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 22 22 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 25 25 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 26 26 H 1.09001 * 109.46998 * 299.99705 * 4 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 5 4 2 28 28 H 1.09000 * 109.47140 * 60.00051 * 5 4 2 29 29 H 1.09001 * 109.47367 * 299.99815 * 6 5 4 30 30 H 1.09004 * 109.47108 * 180.02562 * 6 5 4 31 31 H 1.08992 * 109.46876 * 59.99547 * 7 6 5 32 32 H 1.08997 * 109.47293 * 54.99525 * 8 7 6 33 33 H 1.08998 * 109.47140 * 174.99952 * 8 7 6 34 34 H 0.97004 * 119.99614 * 179.97438 * 12 11 9 35 35 H 1.09001 * 109.47194 * 299.99548 * 17 7 6 36 36 H 1.09000 * 109.46968 * 179.97438 * 17 7 6 37 37 H 1.08996 * 109.47452 * 180.02562 * 18 17 7 38 38 H 1.09001 * 109.46997 * 59.99746 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2490 6 6 4.0799 -1.4426 2.4985 7 6 3.5695 -2.8849 2.4994 8 6 4.0789 -3.6055 3.7492 9 6 5.5808 -3.7142 3.6893 10 1 6.1182 -3.3095 2.8445 11 6 6.2689 -4.3295 4.7135 12 7 5.6144 -4.8218 5.7425 13 14 8.1305 -4.4637 4.6396 14 1 8.7386 -3.2704 5.2811 15 1 8.5675 -5.6882 5.3571 16 1 8.5654 -4.5390 3.2217 17 6 2.0395 -2.8843 2.4996 18 6 1.5295 -2.1636 1.2502 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 1.8934 -0.5138 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -0.2074 2.1393 27 1 3.9330 -1.2359 0.3590 28 1 3.9337 0.3057 1.2488 29 1 3.7170 -0.9281 3.3883 30 1 5.1700 -1.4426 2.4985 31 1 3.9324 -3.3993 1.6097 32 1 3.7906 -3.0418 4.6365 33 1 3.6439 -4.6038 3.7958 34 1 6.0985 -5.2550 6.4630 35 1 1.6764 -2.3699 3.3894 36 1 1.6757 -3.9119 2.4998 37 1 0.4395 -2.1628 1.2506 38 1 1.8925 -2.6780 0.3604 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261155696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:40 Heat of formation + Delta-G solvation = -57.537954 kcal Electronic energy + Delta-G solvation = -14407.253990 eV Core-core repulsion = 12247.297853 eV Total energy + Delta-G solvation = -2159.956137 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.86302 -35.31864 -32.71630 -30.38042 -30.22027 -27.06840 -26.39599 -23.34607 -21.78585 -20.93365 -19.46793 -18.91988 -16.19412 -15.27961 -14.60319 -14.28814 -13.74709 -13.55408 -13.24531 -12.99771 -12.57674 -12.25129 -12.02085 -11.87915 -11.49942 -11.36955 -10.93543 -10.89067 -10.77303 -10.53856 -10.50244 -10.40912 -10.12938 -9.89969 -9.61932 -9.34911 -8.89376 -8.74296 -8.28127 -5.93397 -3.94386 3.34999 3.41264 3.44593 4.50961 4.85276 4.96439 5.02431 5.29629 5.42192 5.55974 5.59415 5.63320 5.75083 5.81911 5.89029 5.91508 5.96762 6.12928 6.15385 6.16778 6.20308 6.30826 6.33766 6.34579 6.55246 6.66019 6.74641 6.79626 6.91086 7.19374 7.21126 7.31557 7.76421 7.93126 8.08215 8.52098 9.12526 9.68773 11.18078 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.056862 B = 0.006521 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.299479 B = 4292.706464 C = 4626.725226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.080 4.080 5 C -0.115 4.115 6 C -0.103 4.103 7 C -0.079 4.079 8 C 0.025 3.975 9 C -0.512 4.512 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.888 3.112 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.115 4.115 18 C -0.112 4.112 19 H 0.057 0.943 20 H 0.052 0.948 21 H 0.047 0.953 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.014 0.986 33 H 0.013 0.987 34 H 0.259 0.741 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.157 9.113 -10.026 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.098 4.098 5 C -0.153 4.153 6 C -0.141 4.141 7 C -0.098 4.098 8 C -0.011 4.011 9 C -0.551 4.551 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.716 3.284 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.152 4.152 18 C -0.150 4.150 19 H 0.076 0.924 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.131 9.019 -9.862 15.643 hybrid contribution 1.061 -0.152 0.112 1.077 sum -7.070 8.867 -9.750 14.956 Atomic orbital electron populations 1.21892 0.95795 1.01736 1.01099 1.21165 0.95280 0.95988 0.98736 1.21891 1.01399 0.96177 1.01074 1.21191 0.95998 0.95710 0.96912 1.21698 0.94475 0.99753 0.99364 1.21489 1.01039 0.95752 0.95797 1.21176 0.92365 0.95481 1.00770 1.19143 0.95465 0.94968 0.91573 1.21283 0.92368 1.36403 1.05017 0.92676 1.25024 0.98125 0.95774 0.95641 1.69973 1.35313 1.39162 1.09280 0.86655 0.86232 0.77442 0.78039 1.20764 1.21327 1.19946 1.21635 0.97579 0.99308 0.96697 1.21637 0.99214 0.95218 0.98915 0.92383 0.92921 0.93367 0.91586 0.92282 0.93375 0.92922 0.91655 0.92699 0.92776 0.93065 0.91436 0.92851 0.96747 0.96833 0.93158 0.92762 0.92794 0.92790 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.84 37.16 0.33 -1.20 16 2 C -0.09 -1.07 2.51 -90.62 -0.23 -1.30 16 3 C -0.15 -1.57 8.84 37.16 0.33 -1.24 16 4 C -0.08 -1.10 1.77 -90.62 -0.16 -1.26 16 5 C -0.12 -1.77 4.85 -26.73 -0.13 -1.90 16 6 C -0.10 -1.97 5.01 -26.73 -0.13 -2.11 16 7 C -0.08 -1.66 2.14 -90.62 -0.19 -1.85 16 8 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 9 C -0.51 -14.57 8.41 -34.44 -0.29 -14.86 16 10 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 11 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 13 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.11 -2.03 5.20 -26.73 -0.14 -2.17 16 18 C -0.11 -1.64 4.85 -26.73 -0.13 -1.77 16 19 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 288.50 15.07 4.35 4.35 Total: -1.00 -29.38 288.50 -8.03 -37.40 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -7.12 Total: -4.40 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -0.97 Total: -27.61 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.74 Total: -26.66 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.38 -8.03 -37.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.137 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds