Wall clock time and date at job start Mon Mar 30 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47148 * 111.00056 * 2 1 4 4 C 1.52703 * 108.71522 * 171.46150 * 3 2 1 5 5 C 1.53078 * 110.58395 * 61.22142 * 4 3 2 6 6 H 1.08998 * 112.44027 * 75.79696 * 5 4 3 7 7 C 1.55705 * 106.58944 * 199.87151 * 5 4 3 8 8 N 1.49540 * 103.62493 * 77.55534 * 7 5 4 9 9 C 1.36941 * 125.47293 * 204.54242 * 8 7 5 10 10 H 1.08004 * 119.99910 * 359.92189 * 9 8 7 11 11 C 1.38807 * 120.00089 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00124 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99860 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47110 * 90.00070 * 13 11 9 15 15 H 1.48509 * 109.47101 * 210.00115 * 13 11 9 16 16 H 1.48496 * 109.47442 * 330.00056 * 13 11 9 17 17 C 1.47367 * 108.81682 * 24.49282 * 8 7 5 18 18 C 1.53467 * 106.64739 * 359.27207 * 17 8 7 19 19 H 1.09004 * 108.78375 * 92.65192 * 18 17 8 20 20 C 1.46884 * 110.62300 * 238.69622 * 2 1 3 21 21 H 1.09006 * 109.47256 * 56.04126 * 1 2 3 22 22 H 1.08993 * 109.47184 * 176.04271 * 1 2 3 23 23 H 1.09004 * 109.46750 * 296.04498 * 1 2 3 24 24 H 1.09002 * 109.62154 * 51.64687 * 3 2 1 25 25 H 1.09001 * 109.62248 * 291.27526 * 3 2 1 26 26 H 1.08991 * 109.25346 * 181.51138 * 4 3 2 27 27 H 1.09002 * 109.25110 * 300.97934 * 4 3 2 28 28 H 1.09001 * 110.42221 * 195.87856 * 7 5 4 29 29 H 1.09001 * 110.42004 * 318.34035 * 7 5 4 30 30 H 0.97005 * 119.99759 * 180.02562 * 12 11 9 31 31 H 1.08996 * 110.02723 * 239.97304 * 17 8 7 32 32 H 1.09000 * 110.02002 * 118.56598 * 17 8 7 33 33 H 1.09001 * 110.22633 * 63.66169 * 20 2 1 34 34 H 1.09001 * 108.32566 * 304.41642 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3737 0.0000 4 6 3.5072 1.3186 0.2147 5 6 4.1840 0.5438 -0.9188 6 1 4.2499 1.1250 -1.8386 7 6 5.5777 0.1008 -0.3843 8 7 5.2627 -1.0669 0.4952 9 6 6.0334 -1.5071 1.5381 10 1 6.9550 -0.9988 1.7806 11 6 5.6307 -2.6071 2.2827 12 7 4.5084 -3.2274 1.9862 13 14 6.6825 -3.2079 3.7048 14 1 6.2648 -2.5218 4.9538 15 1 6.5091 -4.6742 3.8638 16 1 8.1096 -2.9054 3.4274 17 6 3.9886 -1.6629 0.0557 18 6 3.4932 -0.8192 -1.1266 19 1 3.8531 -1.2674 -2.0528 20 6 1.9864 -0.7143 -1.1746 21 1 -0.3634 0.5741 -0.8524 22 1 -0.3633 -1.0251 -0.0709 23 1 -0.3633 0.4512 0.9234 24 1 1.5328 1.9438 0.8052 25 1 1.7797 1.8490 -0.9567 26 1 3.9035 2.3335 0.2431 27 1 3.7176 0.8240 1.1630 28 1 6.2215 -0.2055 -1.2088 29 1 6.0419 0.9081 0.1822 30 1 4.2268 -3.9959 2.5069 31 1 3.2619 -1.6309 0.8675 32 1 4.1486 -2.6932 -0.2621 33 1 1.6944 -0.1974 -2.0888 34 1 1.5597 -1.7173 -1.1811 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307634838.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:48 Heat of formation + Delta-G solvation = 11.966341 kcal Electronic energy + Delta-G solvation = -14885.401482 eV Core-core repulsion = 12624.918934 eV Total energy + Delta-G solvation = -2260.482548 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76046 -37.35659 -34.60119 -32.53342 -31.77019 -28.91786 -27.46238 -25.99074 -23.94152 -22.91426 -21.73127 -19.55490 -18.73430 -17.03264 -16.59362 -15.94048 -15.73951 -15.60080 -15.14853 -14.45302 -13.84767 -13.61062 -13.48882 -13.32212 -13.01175 -12.89522 -12.68708 -12.44643 -12.31555 -12.07738 -11.83478 -11.65111 -11.29799 -10.98815 -10.93492 -10.61456 -9.12261 -8.78360 -7.76848 -5.10923 1.45030 1.47807 1.55971 2.52941 3.16861 3.39982 3.66494 3.82717 3.97111 4.08419 4.32863 4.40635 4.50086 4.58494 4.65998 4.71713 4.77777 4.81664 4.89674 4.97072 5.03556 5.05382 5.13901 5.29083 5.36828 5.51806 5.70897 5.76805 6.00807 6.24818 6.29933 6.34229 7.17536 7.84731 8.52007 9.32902 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.039843 B = 0.010354 C = 0.009406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.587772 B = 2703.666822 C = 2976.149923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.555 5.555 3 C 0.060 3.940 4 C -0.102 4.102 5 C -0.085 4.085 6 H 0.109 0.891 7 C 0.126 3.874 8 N -0.629 5.629 9 C -0.238 4.238 10 H 0.079 0.921 11 C -0.070 4.070 12 N -0.949 5.949 13 Si 0.975 3.025 14 H -0.287 1.287 15 H -0.295 1.295 16 H -0.269 1.269 17 C 0.208 3.792 18 C -0.104 4.104 19 H 0.067 0.933 20 C 0.078 3.922 21 H 0.040 0.960 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.023 0.977 29 H 0.046 0.954 30 H 0.243 0.757 31 H 0.027 0.973 32 H -0.013 1.013 33 H 0.055 0.945 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.270 9.484 -7.113 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.280 5.280 3 C -0.068 4.068 4 C -0.140 4.140 5 C -0.104 4.104 6 H 0.127 0.873 7 C 0.002 3.998 8 N -0.356 5.356 9 C -0.367 4.367 10 H 0.096 0.904 11 C -0.263 4.263 12 N -0.598 5.598 13 Si 0.804 3.196 14 H -0.214 1.214 15 H -0.222 1.222 16 H -0.194 1.194 17 C 0.083 3.917 18 C -0.124 4.124 19 H 0.085 0.915 20 C -0.050 4.050 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.005 0.995 33 H 0.073 0.927 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.097 9.073 -6.523 12.730 hybrid contribution 0.352 -0.563 0.304 0.730 sum -5.745 8.510 -6.219 12.005 Atomic orbital electron populations 1.22377 0.86358 1.02014 1.01335 1.62727 1.08769 1.15325 1.41176 1.22101 0.94998 0.88870 1.00802 1.21431 0.94799 0.99560 0.98239 1.22317 0.94451 0.95079 0.98512 0.87332 1.22372 0.95667 0.89197 0.92576 1.45349 1.23391 1.32661 1.34216 1.19454 1.02263 1.09380 1.05633 0.90364 1.25622 0.99113 0.99030 1.02508 1.70234 1.24106 1.23043 1.42442 0.85120 0.78455 0.76726 0.79297 1.21448 1.22211 1.19418 1.20616 0.86433 0.91613 0.93035 1.21699 0.95291 0.96827 0.98584 0.91477 1.21462 0.93680 0.98572 0.91332 0.94164 0.91778 0.91135 0.90564 0.93060 0.90318 0.94336 0.95945 0.93570 0.94772 0.95523 0.99478 0.92713 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.57 127.69 1.22 1.91 16 2 N -0.56 -18.27 4.55 -926.17 -4.22 -22.49 16 3 C 0.06 1.71 5.44 86.16 0.47 2.18 16 4 C -0.10 -3.43 5.03 30.52 0.15 -3.28 16 5 C -0.08 -2.88 3.69 -9.42 -0.03 -2.92 16 6 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 7 C 0.13 5.31 6.64 86.72 0.58 5.88 16 8 N -0.63 -33.97 2.97 -685.68 -2.04 -36.01 16 9 C -0.24 -14.02 10.29 84.03 0.86 -13.15 16 10 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 11 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 12 N -0.95 -60.16 10.34 21.65 0.22 -59.94 16 13 Si 0.98 47.94 29.55 68.60 2.03 49.97 16 14 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 15 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 C 0.21 10.87 4.43 86.37 0.38 11.25 16 18 C -0.10 -4.01 2.83 -10.83 -0.03 -4.04 16 19 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 20 C 0.08 2.53 4.76 85.70 0.41 2.93 16 21 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 22 H 0.06 1.63 8.05 -2.39 -0.02 1.61 16 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 25 H 0.05 1.22 8.05 -2.39 -0.02 1.20 16 26 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.04 1.69 7.21 -2.39 -0.02 1.67 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.05 1.86 7.99 -2.39 -0.02 1.85 16 30 H 0.24 15.01 8.31 -92.70 -0.77 14.24 16 31 H 0.03 1.58 6.82 -2.39 -0.02 1.56 16 32 H -0.01 -0.78 7.50 -2.39 -0.02 -0.80 16 33 H 0.05 1.45 8.09 -2.39 -0.02 1.43 16 34 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -69.74 261.76 1.52 -68.22 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.04 Total: 3.20 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 4.48 Total: -2.96 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -6.03 Total: -118.43 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -69.74 1.52 -68.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307634838.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.189 kcal (2) G-P(sol) polarization free energy of solvation -69.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds