Wall clock time and date at job start Mon Mar 30 2020 02:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21325 * 119.99657 * 2 1 4 4 C 1.46762 * 120.00180 * 180.02562 * 2 1 3 5 5 N 1.31783 * 122.59767 * 359.97203 * 4 2 1 6 6 C 1.31174 * 115.85946 * 180.02562 * 5 4 2 7 7 C 1.40114 * 125.20190 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.40270 * 120.00026 * 179.72068 * 7 6 5 10 10 N 1.30664 * 120.00034 * 0.27918 * 9 7 6 11 11 Si 1.86798 * 120.00291 * 180.27750 * 9 7 6 12 12 H 1.48500 * 109.47353 * 89.99763 * 11 9 7 13 13 H 1.48501 * 109.47293 * 210.00214 * 11 9 7 14 14 H 1.48503 * 109.47052 * 329.99908 * 11 9 7 15 15 S 1.75956 * 109.59767 * 0.26465 * 6 5 4 16 16 C 1.37724 * 122.59806 * 180.02562 * 4 2 1 17 17 C 1.50700 * 125.48893 * 359.97438 * 16 4 2 18 18 H 1.08996 * 109.46855 * 240.00052 * 1 2 3 19 19 H 1.08995 * 109.47151 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47126 * 120.00034 * 1 2 3 21 21 H 0.97005 * 120.00023 * 179.97438 * 10 9 7 22 22 H 1.08994 * 109.47154 * 89.99949 * 17 16 4 23 23 H 1.09001 * 109.47086 * 210.00957 * 17 16 4 24 24 H 1.09006 * 109.46577 * 330.00526 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2409 -1.2710 -0.0006 5 7 1.6344 -2.4410 -0.0005 6 6 2.4191 -3.4921 -0.0006 7 6 1.9848 -4.8243 -0.0011 8 1 0.9281 -5.0478 -0.0019 9 6 2.9223 -5.8676 -0.0070 10 7 4.2006 -5.5973 -0.0065 11 14 2.3433 -7.6436 -0.0154 12 1 2.1888 -8.1072 -1.4177 13 1 3.3431 -8.4935 0.6797 14 1 1.0376 -7.7419 0.6851 15 16 4.1005 -2.9735 0.0070 16 6 3.6167 -1.3334 -0.0001 17 6 4.5463 -0.1472 0.0005 18 1 -0.3633 -0.5138 0.8900 19 1 -0.3633 1.0276 0.0005 20 1 -0.3633 -0.5138 -0.8900 21 1 4.8490 -6.3188 -0.0102 22 1 4.7700 0.1385 1.0283 23 1 5.4710 -0.4100 -0.5132 24 1 4.0699 0.6879 -0.5133 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307738378.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:58 Heat of formation + Delta-G solvation = -48.754891 kcal Electronic energy + Delta-G solvation = -11526.451633 eV Core-core repulsion = 9336.704035 eV Total energy + Delta-G solvation = -2189.747598 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.66353 -38.68667 -36.00678 -32.82822 -31.50996 -29.64354 -26.63310 -24.29469 -22.62659 -19.63749 -19.25067 -17.86945 -16.79099 -16.37584 -16.13593 -15.52592 -14.87069 -14.60393 -14.02458 -13.65336 -13.61248 -13.32469 -13.05360 -12.95137 -12.84379 -12.41379 -12.01158 -11.96398 -11.35516 -10.44011 -9.86473 -9.75917 -9.32344 -8.90366 -6.73176 0.08383 0.98075 1.34935 1.42153 1.58826 1.61812 1.81758 2.17656 2.41026 3.16658 3.40998 4.13318 4.43627 4.51609 4.64797 4.68393 4.78365 4.97178 5.00861 5.14879 5.35743 5.49859 5.90923 6.33291 6.38190 6.58494 7.62594 8.00968 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.050437 B = 0.010161 C = 0.008510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.017960 B = 2754.930053 C = 3289.489979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.422 3.578 3 O -0.495 6.495 4 C -0.010 4.010 5 N -0.589 5.589 6 C 0.166 3.834 7 C -0.398 4.398 8 H 0.108 0.892 9 C 0.022 3.978 10 N -0.803 5.803 11 Si 1.019 2.981 12 H -0.257 1.257 13 H -0.260 1.260 14 H -0.253 1.253 15 S 0.132 5.868 16 C -0.373 4.373 17 C -0.045 4.045 18 H 0.095 0.905 19 H 0.095 0.905 20 H 0.095 0.905 21 H 0.313 0.687 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 -1.568 -0.047 2.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.302 3.698 3 O -0.374 6.374 4 C -0.147 4.147 5 N -0.313 5.313 6 C -0.089 4.089 7 C -0.441 4.441 8 H 0.126 0.874 9 C -0.198 4.198 10 N -0.432 5.432 11 Si 0.837 3.163 12 H -0.182 1.182 13 H -0.184 1.184 14 H -0.177 1.177 15 S 0.393 5.607 16 C -0.501 4.501 17 C -0.104 4.104 18 H 0.114 0.886 19 H 0.114 0.886 20 H 0.114 0.886 21 H 0.127 0.873 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.622 -1.680 -0.034 1.792 hybrid contribution -0.425 0.197 0.000 0.468 sum -1.047 -1.483 -0.035 1.816 Atomic orbital electron populations 1.21957 0.90683 1.04546 1.05251 1.22275 0.93072 0.85373 0.69047 1.90381 1.73168 1.34040 1.39781 1.20992 0.90954 0.94856 1.07940 1.67359 1.35171 0.96613 1.32148 1.24248 0.90283 0.96806 0.97540 1.19424 0.96779 0.87334 1.40568 0.87397 1.27203 0.93826 1.07674 0.91110 1.68676 1.03360 1.38610 1.32547 0.84596 0.79546 0.72163 0.79982 1.18154 1.18389 1.17679 1.84165 1.12838 0.91838 1.71907 1.26497 0.98487 1.04463 1.20668 1.19935 0.95983 0.93408 1.01092 0.88633 0.88638 0.88627 0.87334 0.92617 0.92214 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.55 9.93 71.24 0.71 -4.84 14 2 C 0.42 18.34 7.23 27.92 0.20 18.55 14 3 O -0.49 -22.29 14.81 -3.17 -0.05 -22.33 14 4 C -0.01 -0.51 6.66 41.26 0.27 -0.23 14 5 N -0.59 -31.17 10.30 -184.69 -1.90 -33.07 14 6 C 0.17 8.90 7.11 85.25 0.61 9.50 14 7 C -0.40 -19.85 9.46 23.22 0.22 -19.63 14 8 H 0.11 5.15 7.85 -2.91 -0.02 5.13 14 9 C 0.02 0.96 5.50 85.36 0.47 1.43 14 10 N -0.80 -36.63 10.63 21.88 0.23 -36.40 14 11 Si 1.02 32.79 29.56 68.60 2.03 34.82 14 12 H -0.26 -7.99 7.11 99.48 0.71 -7.29 14 13 H -0.26 -7.81 7.11 99.48 0.71 -7.10 14 14 H -0.25 -7.99 7.11 99.48 0.71 -7.29 14 15 S 0.13 6.64 20.08 -56.49 -1.13 5.51 14 16 C -0.37 -18.51 6.47 25.56 0.17 -18.34 14 17 C -0.05 -1.92 9.64 71.24 0.69 -1.24 14 18 H 0.10 3.07 8.14 -2.39 -0.02 3.05 14 19 H 0.09 2.62 8.12 -2.39 -0.02 2.60 14 20 H 0.10 3.07 8.14 -2.39 -0.02 3.05 14 21 H 0.31 12.51 8.29 -92.70 -0.77 11.75 14 22 H 0.06 2.23 8.14 -2.39 -0.02 2.21 14 23 H 0.06 2.28 8.14 -2.39 -0.02 2.26 14 24 H 0.07 3.01 5.99 -2.38 -0.01 2.99 14 Total: -1.00 -58.65 231.52 3.73 -54.92 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.22 Total: 11.36 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 3.33 Total: -14.81 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.67 Total: -69.47 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 32.79 SS G_CDS: 2.03 Total: 34.82 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -1.13 Total: 5.51 kcal Total: -58.65 3.73 -54.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307738378.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.170 kcal (2) G-P(sol) polarization free energy of solvation -58.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds