Wall clock time and date at job start Mon Mar 30 2020 03:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00533 * 2 1 4 4 H 1.48495 * 109.47483 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47055 * 300.00514 * 3 2 1 6 6 H 1.48497 * 109.46761 * 60.00325 * 3 2 1 7 7 C 1.37882 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99533 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.47091 * 179.97438 * 10 9 7 12 12 C 1.34649 * 117.00147 * 179.97438 * 11 10 9 13 13 O 1.21412 * 119.99638 * 0.02562 * 12 11 10 14 14 C 1.48238 * 120.00070 * 180.02562 * 12 11 10 15 15 C 1.42296 * 126.94395 * 179.71599 * 14 12 11 16 16 C 1.35305 * 103.92234 * 179.88840 * 15 14 12 17 17 O 1.34021 * 106.67408 * 0.36318 * 16 15 14 18 18 N 1.20895 * 111.85544 * 359.75237 * 17 16 15 19 19 H 0.96999 * 119.99830 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.47510 * 60.00274 * 9 7 2 21 21 H 1.09004 * 109.47043 * 300.00089 * 9 7 2 22 22 H 1.09001 * 109.47142 * 59.99811 * 10 9 7 23 23 H 1.09004 * 109.47006 * 299.99757 * 10 9 7 24 24 H 1.08006 * 128.03607 * 0.02562 * 15 14 12 25 25 H 1.07998 * 126.66298 * 180.12085 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 8 1.5190 -4.9196 0.0001 12 6 2.2523 -6.0489 -0.0004 13 8 3.4648 -5.9854 -0.0008 14 6 1.5792 -7.3697 -0.0004 15 6 2.2042 -8.6481 -0.0065 16 6 1.1673 -9.5174 -0.0011 17 8 0.0478 -8.7806 -0.0007 18 7 0.2887 -7.5959 -0.0004 19 1 -0.4850 0.8400 0.0004 20 1 0.6239 -2.5568 -0.8902 21 1 0.6245 -2.5571 0.8897 22 1 2.8718 -3.6044 0.8894 23 1 2.8717 -3.6044 -0.8906 24 1 3.2607 -8.8723 -0.0117 25 1 1.2298 -10.5956 -0.0013 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308398539.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:10 Heat of formation + Delta-G solvation = -29.110783 kcal Electronic energy + Delta-G solvation = -13027.599049 eV Core-core repulsion = 10395.950412 eV Total energy + Delta-G solvation = -2631.648637 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.28784 -39.90580 -36.29004 -34.18656 -33.36025 -32.03991 -30.30411 -26.03514 -24.39043 -23.17820 -21.26018 -20.64367 -18.48056 -17.94809 -17.30551 -16.28392 -15.96102 -15.89022 -14.60918 -14.36845 -13.60798 -13.39688 -12.90567 -12.38908 -11.82328 -11.33521 -11.09218 -10.82951 -10.82763 -10.64056 -10.52657 -9.98762 -9.71924 -9.69960 -9.30945 -8.45879 -6.11184 -4.16071 0.97941 1.46383 2.66517 2.99660 3.03402 3.27171 3.34438 3.39221 3.93647 4.37353 4.63538 4.80789 5.08952 5.25307 5.33346 5.62314 5.97702 6.02222 6.56973 6.75146 7.51848 7.60095 7.75676 7.87766 8.06698 8.21327 8.89583 9.48363 11.00375 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.081090 B = 0.005475 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.211439 B = 5113.283099 C = 5438.047320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.074 3.926 11 O -0.339 6.339 12 C 0.541 3.459 13 O -0.498 6.498 14 C -0.014 4.014 15 C -0.182 4.182 16 C -0.065 4.065 17 O 0.131 5.869 18 N -0.302 5.302 19 H 0.263 0.737 20 H 0.030 0.970 21 H 0.030 0.970 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.184 0.816 25 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 -18.041 -0.007 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.254 6.254 12 C 0.383 3.617 13 O -0.385 6.385 14 C -0.171 4.171 15 C -0.204 4.204 16 C -0.145 4.145 17 O 0.050 5.950 18 N 0.001 4.999 19 H 0.073 0.927 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.201 0.799 25 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.620 -16.925 -0.008 17.003 hybrid contribution 1.399 0.564 -0.001 1.508 sum 3.019 -16.361 -0.008 16.638 Atomic orbital electron populations 1.69990 1.06110 1.26935 1.49660 1.24998 0.94930 0.99438 0.94831 0.86396 0.80019 0.83068 0.77716 1.19571 1.20809 1.20805 1.20996 0.93214 0.89971 1.52317 0.92117 1.19198 0.94189 0.88823 0.99123 1.23820 0.96574 0.78072 1.01310 1.86658 1.41637 1.15334 1.81780 1.19536 0.84892 0.83713 0.73554 1.90826 1.14094 1.87711 1.45906 1.22673 0.89939 0.94702 1.09773 1.22759 1.02591 0.89237 1.05788 1.26067 0.84015 1.00284 1.04162 1.84876 1.33229 1.11962 1.64915 1.74424 1.17107 0.95285 1.13128 0.92708 0.95185 0.95193 0.91862 0.91856 0.79907 0.75734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.98 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 15 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 15 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 15 10 C 0.07 1.71 5.41 37.16 0.20 1.91 15 11 O -0.34 -7.39 10.23 -40.35 -0.41 -7.80 15 12 C 0.54 10.38 7.99 34.84 0.28 10.66 15 13 O -0.50 -10.06 16.74 -19.20 -0.32 -10.38 15 14 C -0.01 -0.22 7.24 -82.55 -0.60 -0.81 15 15 C -0.18 -1.91 10.99 -39.07 -0.43 -2.34 15 16 C -0.06 -0.48 12.28 29.69 0.36 -0.12 15 17 O 0.13 1.46 11.18 17.23 0.19 1.66 15 18 N -0.30 -4.65 12.12 33.29 0.40 -4.25 15 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 20 H 0.03 0.85 8.14 -51.93 -0.42 0.42 15 21 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.06 1.41 8.14 -51.93 -0.42 0.98 15 23 H 0.06 1.41 8.14 -51.93 -0.42 0.99 15 24 H 0.18 1.52 8.06 -52.48 -0.42 1.10 15 25 H 0.23 0.40 8.06 -52.49 -0.42 -0.03 15 LS Contribution 242.96 15.07 3.66 3.66 Total: -1.00 -33.13 242.96 -3.58 -36.71 By element: Atomic # 1 Polarization: -4.20 SS G_CDS: -2.08 Total: -6.28 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.74 Total: -3.90 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 1.14 Total: -30.22 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.54 Total: -16.53 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -33.13 -3.58 -36.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308398539.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.602 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds