Wall clock time and date at job start Mon Mar 30 2020 03:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00533 * 2 1 4 4 H 1.48495 * 109.47483 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47055 * 300.00514 * 3 2 1 6 6 H 1.48497 * 109.46761 * 60.00325 * 3 2 1 7 7 C 1.37882 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99533 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.47091 * 179.97438 * 10 9 7 12 12 C 1.34649 * 117.00147 * 179.97438 * 11 10 9 13 13 O 1.21412 * 119.99638 * 0.02562 * 12 11 10 14 14 C 1.48238 * 120.00070 * 180.02562 * 12 11 10 15 15 C 1.42296 * 126.94395 * 179.71599 * 14 12 11 16 16 C 1.35305 * 103.92234 * 179.88840 * 15 14 12 17 17 O 1.34021 * 106.67408 * 0.36318 * 16 15 14 18 18 N 1.20895 * 111.85544 * 359.75237 * 17 16 15 19 19 H 0.96999 * 119.99830 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.47510 * 60.00274 * 9 7 2 21 21 H 1.09004 * 109.47043 * 300.00089 * 9 7 2 22 22 H 1.09001 * 109.47142 * 59.99811 * 10 9 7 23 23 H 1.09004 * 109.47006 * 299.99757 * 10 9 7 24 24 H 1.08006 * 128.03607 * 0.02562 * 15 14 12 25 25 H 1.07998 * 126.66298 * 180.12085 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 8 1.5190 -4.9196 0.0001 12 6 2.2523 -6.0489 -0.0004 13 8 3.4648 -5.9854 -0.0008 14 6 1.5792 -7.3697 -0.0004 15 6 2.2042 -8.6481 -0.0065 16 6 1.1673 -9.5174 -0.0011 17 8 0.0478 -8.7806 -0.0007 18 7 0.2887 -7.5959 -0.0004 19 1 -0.4850 0.8400 0.0004 20 1 0.6239 -2.5568 -0.8902 21 1 0.6245 -2.5571 0.8897 22 1 2.8718 -3.6044 0.8894 23 1 2.8717 -3.6044 -0.8906 24 1 3.2607 -8.8723 -0.0117 25 1 1.2298 -10.5956 -0.0013 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308398539.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:10 Heat of formation + Delta-G solvation = -51.695981 kcal Electronic energy + Delta-G solvation = -13028.578416 eV Core-core repulsion = 10395.950412 eV Total energy + Delta-G solvation = -2632.628004 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.28234 -41.49930 -37.94764 -35.54721 -35.15368 -32.99742 -32.34497 -27.74040 -26.08416 -24.10066 -23.12854 -22.08934 -19.58596 -18.98354 -18.87985 -18.16224 -17.62161 -17.43428 -16.54011 -15.35553 -15.22012 -14.61939 -14.45352 -14.27924 -13.29385 -13.14197 -12.83577 -12.69573 -12.62841 -12.19985 -11.71429 -11.70353 -11.59143 -11.45895 -10.79526 -10.66629 -8.30888 -6.45346 -0.17085 0.70849 1.27791 1.40490 1.40973 1.55035 1.66485 2.31305 2.37996 2.82999 3.03483 3.61218 3.87036 4.09047 4.11500 4.18683 4.57275 4.64715 4.96141 5.04967 5.35292 5.36810 5.66299 5.99282 6.36008 6.68421 7.03671 7.24914 8.82376 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.081090 B = 0.005475 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.211439 B = 5113.283099 C = 5438.047320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.069 0.931 9 C 0.030 3.970 10 C 0.089 3.911 11 O -0.358 6.358 12 C 0.540 3.460 13 O -0.514 6.514 14 C -0.055 4.055 15 C -0.189 4.189 16 C -0.021 4.021 17 O 0.149 5.851 18 N -0.343 5.343 19 H 0.269 0.731 20 H 0.004 0.996 21 H 0.004 0.996 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.204 0.796 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 -19.658 -0.009 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.087 0.913 9 C -0.008 4.008 10 C 0.016 3.984 11 O -0.274 6.274 12 C 0.383 3.617 13 O -0.402 6.402 14 C -0.209 4.209 15 C -0.212 4.212 16 C -0.101 4.101 17 O 0.063 5.937 18 N -0.038 5.038 19 H 0.077 0.923 20 H 0.023 0.977 21 H 0.023 0.977 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.221 0.779 25 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges 2.626 -18.530 -0.009 18.716 hybrid contribution 1.023 0.855 0.000 1.334 sum 3.650 -17.675 -0.009 18.048 Atomic orbital electron populations 1.70119 1.07993 1.28355 1.50266 1.26044 0.95876 1.03676 0.93922 0.85192 0.78903 0.77646 0.78044 1.18354 1.20003 1.19993 1.21384 0.93826 0.90870 1.52691 0.91256 1.19006 0.94381 0.90760 0.96605 1.23372 0.95199 0.78010 1.01781 1.86633 1.42310 1.15856 1.82590 1.20098 0.84963 0.84099 0.72535 1.90792 1.14648 1.87999 1.46780 1.22610 0.90921 0.94214 1.13139 1.23107 1.04419 0.87249 1.06394 1.27189 0.81281 1.02002 0.99606 1.84827 1.34601 1.10939 1.63311 1.74448 1.17341 0.97409 1.14559 0.92254 0.97727 0.97736 0.91308 0.91298 0.77914 0.69362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.67 15 2 C 0.00 0.22 5.46 84.66 0.46 0.68 15 3 Si 0.98 44.23 29.54 68.60 2.03 46.26 15 4 H -0.26 -11.16 7.11 99.48 0.71 -10.46 15 5 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 7 C -0.55 -31.91 9.11 25.60 0.23 -31.68 15 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 15 9 C 0.03 1.67 5.35 29.85 0.16 1.83 15 10 C 0.09 4.22 5.41 71.98 0.39 4.61 15 11 O -0.36 -16.26 10.23 -55.58 -0.57 -16.83 15 12 C 0.54 21.16 7.99 70.48 0.56 21.72 15 13 O -0.51 -21.00 16.74 20.12 0.34 -20.66 15 14 C -0.06 -1.69 7.24 42.94 0.31 -1.38 15 15 C -0.19 -3.46 10.99 22.60 0.25 -3.21 15 16 C -0.02 -0.21 12.28 67.14 0.82 0.61 15 17 O 0.15 2.93 11.18 71.85 0.80 3.73 15 18 N -0.34 -10.39 12.12 -49.53 -0.60 -10.99 15 19 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 20 H 0.00 0.26 8.14 -2.39 -0.02 0.24 15 21 H 0.00 0.26 8.14 -2.38 -0.02 0.24 15 22 H 0.07 3.14 8.14 -2.39 -0.02 3.12 15 23 H 0.07 3.15 8.14 -2.38 -0.02 3.13 15 24 H 0.20 2.75 8.06 -2.91 -0.02 2.73 15 25 H 0.29 -1.12 8.06 -2.91 -0.02 -1.15 15 Total: -1.00 -75.12 242.96 6.68 -68.44 By element: Atomic # 1 Polarization: -7.67 SS G_CDS: 1.20 Total: -6.47 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 3.19 Total: -6.82 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -0.32 Total: -67.65 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: 0.57 Total: -33.76 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -75.12 6.68 -68.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308398539.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.743 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds