Wall clock time and date at job start Mon Mar 30 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35307 * 126.66105 * 2 1 4 4 C 1.42299 * 103.92127 * 179.97438 * 3 2 1 5 5 C 1.48243 * 126.94461 * 180.02562 * 4 3 2 6 6 O 1.21413 * 119.99781 * 359.97438 * 5 4 3 7 7 O 1.34647 * 120.00095 * 180.27908 * 5 4 3 8 8 C 1.45201 * 117.00027 * 179.72677 * 7 5 4 9 9 C 1.50698 * 109.46839 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00587 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00129 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00531 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 119.99591 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46584 * 90.00176 * 13 11 9 15 15 H 1.48490 * 109.47082 * 210.00346 * 13 11 9 16 16 H 1.48500 * 109.46953 * 330.00441 * 13 11 9 17 17 N 1.31017 * 106.11540 * 0.26542 * 4 3 2 18 18 O 1.20908 * 111.42887 * 359.53064 * 17 4 3 19 19 H 1.09005 * 109.46991 * 89.99937 * 1 2 3 20 20 H 1.08997 * 109.46934 * 209.99771 * 1 2 3 21 21 H 1.09005 * 109.47246 * 329.99856 * 1 2 3 22 22 H 1.08002 * 128.04149 * 0.02562 * 3 2 1 23 23 H 1.08997 * 109.46577 * 299.99518 * 8 7 5 24 24 H 1.08997 * 109.47282 * 59.99661 * 8 7 5 25 25 H 0.96998 * 120.00082 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0854 0.0000 4 6 3.6273 0.5354 0.0006 5 6 4.9070 1.2836 0.0014 6 8 4.9003 2.4977 0.0011 7 8 6.0768 0.6169 -0.0037 8 6 7.2901 1.4144 -0.0088 9 6 8.4903 0.5030 -0.0135 10 1 8.3547 -0.5685 -0.0123 11 6 9.7615 1.0370 -0.0192 12 7 10.8088 0.2417 -0.0239 13 14 9.9960 2.8902 -0.0220 14 1 10.0640 3.3825 1.3775 15 1 11.2580 3.2284 -0.7276 16 1 8.8523 3.5329 -0.7178 17 7 3.4762 -0.7660 -0.0049 18 8 2.3072 -1.0750 0.0006 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5139 22 1 2.0300 2.1272 0.0004 23 1 7.3077 2.0434 -0.8988 24 1 7.3153 2.0432 0.8812 25 1 11.7031 0.6174 -0.0275 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379376957.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:35 Heat of formation + Delta-G solvation = -49.103632 kcal Electronic energy + Delta-G solvation = -13186.959342 eV Core-core repulsion = 10554.443751 eV Total energy + Delta-G solvation = -2632.515592 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.32867 -41.42345 -37.79561 -35.36027 -35.08189 -34.39347 -30.93288 -28.74414 -26.82463 -24.38460 -23.78520 -21.57374 -19.30137 -19.11102 -18.65844 -18.28158 -17.57549 -17.45268 -16.35147 -15.15513 -14.87242 -14.67276 -14.55106 -14.06630 -13.91628 -13.39505 -13.34295 -12.94310 -12.45346 -12.17541 -11.95179 -11.82475 -11.75562 -11.71228 -10.97606 -10.46690 -8.51579 -6.64311 -0.20657 0.55988 1.26426 1.28761 1.37551 1.42762 1.64949 2.07142 2.18271 2.79385 2.81927 3.52343 3.79405 3.98522 4.23193 4.33401 4.58618 4.77665 4.83494 4.89738 4.98095 5.27764 5.29254 5.93562 6.39091 6.49114 6.97397 6.99643 8.64329 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.075447 B = 0.006467 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.032669 B = 4328.846749 C = 4679.422027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.013 4.013 3 C -0.186 4.186 4 C -0.044 4.044 5 C 0.535 3.465 6 O -0.516 6.516 7 O -0.350 6.350 8 C 0.188 3.812 9 C -0.561 4.561 10 H 0.042 0.958 11 C 0.028 3.972 12 N -0.926 5.926 13 Si 0.948 3.052 14 H -0.255 1.255 15 H -0.261 1.261 16 H -0.253 1.253 17 N -0.341 5.341 18 O 0.145 5.855 19 H 0.112 0.888 20 H 0.104 0.896 21 H 0.117 0.883 22 H 0.206 0.794 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.575 3.103 0.060 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 C -0.208 4.208 4 C -0.198 4.198 5 C 0.379 3.621 6 O -0.405 6.405 7 O -0.265 6.265 8 C 0.116 3.884 9 C -0.598 4.598 10 H 0.061 0.939 11 C -0.172 4.172 12 N -0.563 5.563 13 Si 0.768 3.232 14 H -0.179 1.179 15 H -0.186 1.186 16 H -0.177 1.177 17 N -0.037 5.037 18 O 0.061 5.939 19 H 0.130 0.870 20 H 0.123 0.877 21 H 0.136 0.864 22 H 0.223 0.777 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.317 2.480 0.049 21.461 hybrid contribution 0.688 1.176 0.006 1.362 sum -20.630 3.656 0.055 20.951 Atomic orbital electron populations 1.20736 0.78728 1.06961 1.06294 1.25480 0.98444 0.83467 1.00183 1.22713 0.87059 1.03493 1.07530 1.22468 0.94215 0.90696 1.12373 1.20133 0.83888 0.85391 0.72730 1.90760 1.88324 1.14387 1.47026 1.86606 1.15323 1.42572 1.81949 1.21103 0.78520 0.91193 0.97632 1.20910 0.89817 0.94196 1.54881 0.93929 1.25666 0.94285 1.04497 0.92793 1.69964 0.99273 1.38016 1.49086 0.85724 0.79375 0.77781 0.80300 1.17885 1.18552 1.17678 1.74422 0.98283 1.15829 1.15120 1.84811 1.10452 1.34510 1.64152 0.86983 0.87698 0.86446 0.77708 0.94725 0.94798 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.44 71.24 0.74 0.40 15 2 C -0.01 -0.22 7.47 25.01 0.19 -0.04 15 3 C -0.19 -4.38 10.92 22.60 0.25 -4.14 15 4 C -0.04 -1.55 7.24 42.94 0.31 -1.24 15 5 C 0.54 23.78 7.99 70.48 0.56 24.34 15 6 O -0.52 -23.42 16.74 20.12 0.34 -23.08 15 7 O -0.35 -18.23 10.21 -55.56 -0.57 -18.80 15 8 C 0.19 10.21 4.29 71.24 0.31 10.51 15 9 C -0.56 -34.89 10.00 25.60 0.26 -34.63 15 10 H 0.04 2.94 8.06 -2.91 -0.02 2.92 15 11 C 0.03 1.68 5.47 84.66 0.46 2.14 15 12 N -0.93 -57.74 13.96 21.45 0.30 -57.44 15 13 Si 0.95 43.97 27.47 68.60 1.88 45.86 15 14 H -0.25 -11.18 7.11 99.48 0.71 -10.47 15 15 H -0.26 -11.37 7.11 99.48 0.71 -10.66 15 16 H -0.25 -11.32 6.54 99.48 0.65 -10.67 15 17 N -0.34 -12.01 12.12 -49.52 -0.60 -12.61 15 18 O 0.15 3.69 11.18 71.88 0.80 4.49 15 19 H 0.11 0.20 8.14 -2.38 -0.02 0.18 15 20 H 0.10 0.23 8.14 -2.39 -0.02 0.21 15 21 H 0.12 0.14 8.14 -2.38 -0.02 0.12 15 22 H 0.21 3.70 8.06 -2.91 -0.02 3.68 15 23 H 0.03 1.84 7.19 -2.39 -0.02 1.82 15 24 H 0.03 1.78 7.57 -2.39 -0.02 1.76 15 25 H 0.28 15.85 8.31 -92.71 -0.77 15.08 15 Total: -1.00 -76.65 239.86 6.39 -70.27 By element: Atomic # 1 Polarization: -7.19 SS G_CDS: 1.15 Total: -6.03 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 3.08 Total: -2.65 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -0.30 Total: -70.05 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: 0.57 Total: -37.39 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -76.65 6.39 -70.27 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379376957.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.163 kcal (2) G-P(sol) polarization free energy of solvation -76.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds