Wall clock time and date at job start Mon Mar 30 2020 03:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38917 * 119.69654 * 2 1 4 4 C 1.38237 * 120.61371 * 179.76429 * 3 2 1 5 5 Cl 1.73600 * 119.99590 * 180.28172 * 4 3 2 6 6 C 1.38861 * 120.00260 * 0.51736 * 4 3 2 7 7 N 1.38804 * 120.29289 * 179.76910 * 6 4 3 8 8 C 1.41500 * 119.40512 * 359.48633 * 6 4 3 9 9 C 1.41050 * 120.29760 * 180.23189 * 8 6 4 10 10 H 1.07999 * 120.00342 * 329.66301 * 9 8 6 11 11 C 1.39927 * 119.99868 * 149.67111 * 9 8 6 12 12 N 1.30885 * 120.00041 * 162.16361 * 11 9 8 13 13 Si 1.86795 * 119.99558 * 342.15744 * 11 9 8 14 14 H 1.48499 * 109.46945 * 95.39363 * 13 11 9 15 15 H 1.48510 * 109.47035 * 215.38893 * 13 11 9 16 16 H 1.48500 * 109.47519 * 335.39113 * 13 11 9 17 17 C 1.36432 * 119.69817 * 180.02562 * 2 1 3 18 18 H 1.09004 * 109.46781 * 269.97644 * 1 2 3 19 19 H 1.08994 * 109.47683 * 29.97535 * 1 2 3 20 20 H 1.08995 * 109.47102 * 149.97993 * 1 2 3 21 21 H 1.07995 * 119.68935 * 0.02562 * 3 2 1 22 22 H 0.96998 * 119.99635 * 179.72053 * 7 6 4 23 23 H 0.96999 * 120.00185 * 359.71849 * 7 6 4 24 24 H 0.97000 * 119.99932 * 179.97438 * 12 11 9 25 25 H 1.08003 * 120.01367 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2067 0.0000 4 6 3.5773 1.2288 0.0049 5 17 4.4210 2.7460 0.0122 6 6 4.2909 0.0376 -0.0010 7 7 5.6788 0.0528 -0.0010 8 6 3.5904 -1.1918 -0.0009 9 6 4.2963 -2.4130 -0.0019 10 1 5.2650 -2.4764 -0.4751 11 6 3.7413 -3.5424 0.6100 12 7 4.2003 -4.7341 0.3233 13 14 2.3454 -3.3491 1.8361 14 1 1.0465 -3.5353 1.1408 15 1 2.4835 -4.3677 2.9080 16 1 2.3964 -1.9909 2.4344 17 6 2.1829 -1.1851 -0.0005 18 1 -0.3633 -0.0004 1.0277 19 1 -0.3634 0.8901 -0.5134 20 1 -0.3633 -0.8898 -0.5141 21 1 1.6452 2.1361 0.0004 22 1 6.1730 -0.7819 -0.0010 23 1 6.1546 0.8981 -0.0009 24 1 3.8158 -5.5170 0.7478 25 1 1.6382 -2.1177 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716085.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:16 Heat of formation + Delta-G solvation = -20.628080 kcal Electronic energy + Delta-G solvation = -11752.429583 eV Core-core repulsion = 9561.857948 eV Total energy + Delta-G solvation = -2190.571634 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.13173 -37.22974 -35.85986 -35.26029 -32.16683 -31.26651 -27.30828 -26.24221 -23.44638 -21.41331 -19.19638 -17.95737 -17.83185 -16.59173 -15.87889 -15.07057 -14.97291 -14.71615 -14.41155 -13.77570 -13.59114 -13.18126 -12.91023 -12.73067 -12.57562 -12.05306 -11.87729 -11.62029 -11.43819 -11.04148 -10.85982 -9.39552 -8.83180 -8.24592 -6.27736 0.67725 0.90383 1.29541 1.41550 1.49618 1.51543 2.16172 2.59990 3.37623 3.45226 4.29043 4.42052 4.64075 4.70960 4.90014 4.95747 5.17873 5.29974 5.36956 5.47895 5.68766 6.03757 6.09549 6.35822 6.56179 6.82448 6.98293 7.26882 8.24950 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.033221 B = 0.013337 C = 0.010193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.647050 B = 2098.966427 C = 2746.274012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.099 4.099 3 C -0.172 4.172 4 C -0.092 4.092 5 Cl -0.089 7.089 6 C 0.135 3.865 7 N -0.866 5.866 8 C 0.029 3.971 9 C -0.472 4.472 10 H 0.065 0.935 11 C 0.050 3.950 12 N -0.855 5.855 13 Si 0.956 3.044 14 H -0.259 1.259 15 H -0.284 1.284 16 H -0.256 1.256 17 C -0.216 4.216 18 H 0.069 0.931 19 H 0.080 0.920 20 H 0.059 0.941 21 H 0.131 0.869 22 H 0.398 0.602 23 H 0.395 0.605 24 H 0.290 0.710 25 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.827 8.331 1.373 9.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C -0.192 4.192 4 C -0.124 4.124 5 Cl -0.060 7.060 6 C 0.030 3.970 7 N -0.408 5.408 8 C 0.023 3.977 9 C -0.503 4.503 10 H 0.083 0.917 11 C -0.163 4.163 12 N -0.482 5.482 13 Si 0.781 3.219 14 H -0.184 1.184 15 H -0.211 1.211 16 H -0.180 1.180 17 C -0.236 4.236 18 H 0.088 0.912 19 H 0.099 0.901 20 H 0.078 0.922 21 H 0.149 0.851 22 H 0.228 0.772 23 H 0.225 0.775 24 H 0.100 0.900 25 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.739 8.173 1.375 9.092 hybrid contribution 0.377 -0.330 0.340 0.605 sum -3.362 7.843 1.715 8.704 Atomic orbital electron populations 1.20701 0.89958 1.02838 1.02267 1.19343 0.96727 0.91936 1.02066 1.20319 0.90877 0.97667 1.10346 1.20219 0.92702 0.83712 1.15814 1.98239 1.78545 1.31582 1.97657 1.17776 0.85261 0.91692 1.02263 1.41977 1.02585 1.10561 1.85664 1.17430 0.92318 0.91219 0.96710 1.19049 1.05173 0.92646 1.33427 0.91655 1.26620 0.98561 0.93851 0.97292 1.69736 1.40964 0.99716 1.37779 0.85593 0.78888 0.78917 0.78492 1.18398 1.21069 1.18004 1.20631 0.93371 0.97174 1.12468 0.91201 0.90141 0.92162 0.85107 0.77221 0.77506 0.89952 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.10 9.99 71.23 0.71 -2.38 15 2 C -0.10 -3.95 5.84 -20.13 -0.12 -4.07 15 3 C -0.17 -6.65 9.46 22.43 0.21 -6.43 15 4 C -0.09 -3.73 6.33 22.42 0.14 -3.59 15 5 Cl -0.09 -2.95 27.60 -2.72 -0.08 -3.03 15 6 C 0.14 6.06 6.79 38.99 0.26 6.32 15 7 N -0.87 -33.86 8.94 -50.31 -0.45 -34.31 15 8 C 0.03 1.42 5.11 -21.17 -0.11 1.31 15 9 C -0.47 -25.29 8.92 23.37 0.21 -25.08 15 10 H 0.07 3.66 7.04 -2.91 -0.02 3.64 15 11 C 0.05 2.64 5.41 85.24 0.46 3.10 15 12 N -0.85 -46.13 13.93 21.83 0.30 -45.83 15 13 Si 0.96 42.56 24.52 68.60 1.68 44.24 15 14 H -0.26 -10.88 6.72 99.48 0.67 -10.21 15 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 16 H -0.26 -11.75 6.86 99.48 0.68 -11.07 15 17 C -0.22 -10.01 6.72 22.46 0.15 -9.86 15 18 H 0.07 1.96 8.14 -2.38 -0.02 1.94 15 19 H 0.08 2.05 8.08 -2.39 -0.02 2.03 15 20 H 0.06 1.79 8.07 -2.39 -0.02 1.77 15 21 H 0.13 4.31 8.06 -2.91 -0.02 4.28 15 22 H 0.40 15.76 7.15 -92.71 -0.66 15.10 15 23 H 0.40 13.32 7.50 -92.71 -0.70 12.62 15 24 H 0.29 14.24 8.30 -92.71 -0.77 13.47 15 25 H 0.10 4.63 4.77 -2.91 -0.01 4.62 15 Total: -1.00 -55.95 227.34 3.20 -52.74 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -0.19 Total: 26.88 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 1.93 Total: -40.70 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -0.15 Total: -80.14 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.68 Total: 44.24 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.08 Total: -3.03 kcal Total: -55.95 3.20 -52.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716085.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.116 kcal (2) G-P(sol) polarization free energy of solvation -55.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds