Wall clock time and date at job start Mon Mar 30 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36343 * 120.08153 * 2 1 4 4 C 1.39583 * 120.19588 * 179.97438 * 3 2 1 5 5 N 1.38871 * 119.83005 * 179.97438 * 4 3 2 6 6 C 1.39494 * 120.33636 * 0.02562 * 4 3 2 7 7 C 1.36479 * 120.15308 * 359.73677 * 6 4 3 8 8 Cl 1.73602 * 120.09856 * 180.27777 * 7 6 4 9 9 C 1.40865 * 120.07713 * 179.97438 * 2 1 3 10 10 C 1.41100 * 120.16347 * 0.02562 * 9 2 1 11 11 H 1.08004 * 119.99962 * 315.50032 * 10 9 2 12 12 C 1.39863 * 119.99882 * 135.77789 * 10 9 2 13 13 N 1.30908 * 120.00016 * 338.58735 * 12 10 9 14 14 Si 1.86798 * 119.99771 * 158.59563 * 12 10 9 15 15 H 1.48498 * 109.47666 * 89.99600 * 14 12 10 16 16 H 1.48508 * 109.46797 * 209.99638 * 14 12 10 17 17 H 1.48496 * 109.47260 * 329.99454 * 14 12 10 18 18 H 1.08998 * 109.47036 * 270.02202 * 1 2 3 19 19 H 1.09000 * 109.46775 * 30.02015 * 1 2 3 20 20 H 1.09000 * 109.47011 * 150.02277 * 1 2 3 21 21 H 1.08003 * 119.90043 * 359.97438 * 3 2 1 22 22 H 0.96999 * 120.00297 * 0.02562 * 5 4 3 23 23 H 0.96999 * 120.00260 * 179.97438 * 5 4 3 24 24 H 1.07999 * 119.92618 * 179.97438 * 6 4 3 25 25 H 0.97003 * 120.00421 * 185.22106 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1798 0.0000 4 6 3.5862 1.1826 0.0005 5 7 4.2746 2.3887 0.0000 6 6 4.2932 -0.0199 0.0005 7 6 3.6233 -1.2090 0.0054 8 17 4.5045 -2.7047 0.0127 9 6 2.2130 -1.2190 0.0005 10 6 1.5126 -2.4439 0.0005 11 1 0.6652 -2.5814 0.6558 12 6 1.9194 -3.4820 -0.8438 13 7 2.6414 -3.2189 -1.9036 14 14 1.4322 -5.2439 -0.4594 15 1 0.1355 -5.5530 -1.1139 16 1 2.4767 -6.1686 -0.9688 17 1 1.2972 -5.4108 1.0099 18 1 -0.3633 0.0004 1.0277 19 1 -0.3633 0.8898 -0.5142 20 1 -0.3633 -0.8902 -0.5135 21 1 1.6501 2.1150 -0.0004 22 1 3.7855 3.2263 -0.0004 23 1 5.2446 2.3935 0.0007 24 1 5.3731 -0.0101 0.0005 25 1 2.8598 -3.9268 -2.5298 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575716096.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:04 Heat of formation + Delta-G solvation = 4.090884 kcal Electronic energy + Delta-G solvation = -11810.441119 eV Core-core repulsion = 9620.941380 eV Total energy + Delta-G solvation = -2189.499740 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.12220 -34.97786 -34.18510 -32.59009 -30.70374 -28.43617 -26.13875 -24.02570 -20.97863 -19.84832 -17.16596 -16.02674 -15.48665 -14.92148 -13.91904 -13.44747 -12.89037 -12.79938 -12.12631 -11.79613 -11.64845 -11.18425 -11.16072 -10.93787 -10.60532 -10.40444 -10.00939 -9.70185 -9.37390 -8.86728 -8.22410 -7.30971 -6.57553 -6.28518 -4.09970 2.74080 2.92811 3.22844 3.24528 3.30193 3.92151 4.16118 4.79238 4.91515 5.47866 6.08963 6.17874 6.40260 6.65455 6.70155 6.88462 6.99267 7.19396 7.38653 7.41278 7.63883 7.96847 8.09773 8.45737 8.62060 8.67014 8.97482 9.10826 10.49774 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.037620 B = 0.013694 C = 0.010688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.103017 B = 2044.170161 C = 2619.018241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.124 4.124 3 C -0.164 4.164 4 C 0.116 3.884 5 N -0.894 5.894 6 C -0.167 4.167 7 C -0.033 4.033 8 Cl -0.098 7.098 9 C 0.091 3.909 10 C -0.484 4.484 11 H 0.077 0.923 12 C 0.095 3.905 13 N -0.790 5.790 14 Si 0.889 3.111 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.262 1.262 18 H 0.045 0.955 19 H 0.039 0.961 20 H 0.069 0.931 21 H 0.093 0.907 22 H 0.384 0.616 23 H 0.384 0.616 24 H 0.098 0.902 25 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 4.005 2.027 4.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.436 5.436 6 C -0.190 4.190 7 C -0.062 4.062 8 Cl -0.069 7.069 9 C 0.087 3.913 10 C -0.515 4.515 11 H 0.095 0.905 12 C -0.123 4.123 13 N -0.415 5.415 14 Si 0.714 3.286 15 H -0.200 1.200 16 H -0.204 1.204 17 H -0.186 1.186 18 H 0.064 0.936 19 H 0.058 0.942 20 H 0.088 0.912 21 H 0.112 0.888 22 H 0.210 0.790 23 H 0.210 0.790 24 H 0.116 0.884 25 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.957 3.656 1.852 4.208 hybrid contribution 0.224 -0.661 -0.044 0.699 sum 1.180 2.995 1.808 3.692 Atomic orbital electron populations 1.20439 0.92773 1.01116 0.99966 1.19424 0.94742 0.92060 1.06412 1.19839 0.91615 0.96943 1.10250 1.17110 0.90844 0.85259 1.05131 1.41812 1.07519 1.04747 1.89539 1.19727 0.97581 0.90602 1.11092 1.20444 0.92086 0.84080 1.09560 1.98204 1.75545 1.36334 1.96800 1.17076 0.89134 0.92689 0.92357 1.18978 1.14348 0.96077 1.22079 0.90479 1.25519 0.92855 0.99824 0.94119 1.69826 1.29070 1.34761 1.07877 0.86604 0.78533 0.83305 0.80133 1.20016 1.20439 1.18626 0.93630 0.94227 0.91185 0.88848 0.78973 0.79028 0.88426 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.52 36.01 0.34 -1.41 15 2 C -0.12 -2.95 5.90 -104.31 -0.62 -3.56 15 3 C -0.16 -3.56 9.46 -39.76 -0.38 -3.94 15 4 C 0.12 2.47 6.77 -83.70 -0.57 1.90 15 5 N -0.89 -14.65 9.05 32.50 0.29 -14.36 15 6 C -0.17 -3.85 9.59 -39.75 -0.38 -4.23 15 7 C -0.03 -0.85 5.90 -39.16 -0.23 -1.08 15 8 Cl -0.10 -2.39 24.93 -51.86 -1.29 -3.69 15 9 C 0.09 2.39 5.26 -106.76 -0.56 1.83 15 10 C -0.48 -12.82 7.24 -37.89 -0.27 -13.09 15 11 H 0.08 1.99 7.73 -52.48 -0.41 1.58 15 12 C 0.09 2.45 3.71 -17.34 -0.06 2.39 15 13 N -0.79 -21.11 11.21 55.54 0.62 -20.49 15 14 Si 0.89 19.78 29.61 -169.99 -5.03 14.74 15 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 17 H -0.26 -5.82 7.11 56.52 0.40 -5.41 15 18 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 19 H 0.04 0.71 8.08 -51.93 -0.42 0.29 15 20 H 0.07 1.50 7.08 -51.93 -0.37 1.13 15 21 H 0.09 1.78 8.06 -52.48 -0.42 1.35 15 22 H 0.38 5.37 8.83 -40.82 -0.36 5.01 15 23 H 0.38 5.52 8.83 -40.82 -0.36 5.16 15 24 H 0.10 2.07 8.06 -52.49 -0.42 1.65 15 25 H 0.28 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 232.59 15.07 3.51 3.51 Total: -1.00 -28.10 232.59 -6.95 -35.05 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -2.32 Total: 6.43 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -2.73 Total: -21.20 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.92 Total: -34.84 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.74 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -1.29 Total: -3.69 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.10 -6.95 -35.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716096.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.145 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds