Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38593 * 119.82567 * 2 1 4 4 C 1.39171 * 120.45140 * 180.02562 * 3 2 1 5 5 N 1.39783 * 119.95503 * 179.97438 * 4 3 2 6 6 C 1.38485 * 120.08485 * 359.72185 * 4 3 2 7 7 Cl 1.73602 * 120.17743 * 180.27705 * 6 4 3 8 8 C 1.40685 * 119.63953 * 0.55083 * 6 4 3 9 9 C 1.41356 * 120.21331 * 179.71873 * 8 6 4 10 10 H 1.08006 * 119.99991 * 28.71516 * 9 8 6 11 11 C 1.39924 * 120.00228 * 208.71117 * 9 8 6 12 12 N 1.30839 * 120.00336 * 197.49816 * 11 9 8 13 13 Si 1.86804 * 120.00062 * 17.49534 * 11 9 8 14 14 H 1.48499 * 109.47025 * 270.00339 * 13 11 9 15 15 H 1.48504 * 109.46583 * 29.99848 * 13 11 9 16 16 H 1.48491 * 109.47458 * 149.99952 * 13 11 9 17 17 C 1.37588 * 119.82339 * 180.02562 * 2 1 3 18 18 H 1.08989 * 109.46823 * 269.97956 * 1 2 3 19 19 H 1.08998 * 109.46692 * 29.97948 * 1 2 3 20 20 H 1.08996 * 109.47136 * 149.97416 * 1 2 3 21 21 H 1.08003 * 119.77346 * 0.02562 * 3 2 1 22 22 H 0.96998 * 120.00137 * 0.02562 * 5 4 3 23 23 H 0.97004 * 119.99187 * 179.97438 * 5 4 3 24 24 H 0.97002 * 119.99932 * 355.43315 * 12 11 9 25 25 H 1.08001 * 120.04782 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2024 0.0000 4 6 3.5879 1.2176 -0.0005 5 7 4.2726 2.4362 -0.0011 6 6 4.2952 0.0269 0.0047 7 17 6.0311 0.0431 0.0113 8 6 3.5993 -1.1957 -0.0011 9 6 4.3090 -2.4182 -0.0018 10 1 5.2879 -2.4745 0.4510 11 6 3.7433 -3.5553 -0.5891 12 7 4.2150 -4.7420 -0.3044 13 14 2.3146 -3.3791 -1.7796 14 1 1.0348 -3.4347 -1.0286 15 1 2.4174 -2.0773 -2.4868 16 1 2.3561 -4.4849 -2.7698 17 6 2.1913 -1.1937 -0.0005 18 1 -0.3632 -0.0004 1.0276 19 1 -0.3632 0.8902 -0.5135 20 1 -0.3633 -0.8897 -0.5142 21 1 1.6498 2.1339 0.0004 22 1 3.7779 3.2705 -0.0007 23 1 5.2426 2.4474 -0.0011 24 1 4.9981 -4.8298 0.2613 25 1 1.6492 -2.1278 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716203.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = -27.874384 kcal Electronic energy + Delta-G solvation = -11755.109639 eV Core-core repulsion = 9564.223781 eV Total energy + Delta-G solvation = -2190.885858 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.97282 -36.91577 -36.22414 -35.07186 -32.88678 -29.85718 -27.29258 -26.74146 -22.85451 -21.49739 -19.99282 -17.73452 -17.48109 -16.75790 -15.72055 -15.57741 -14.75774 -14.36269 -14.22564 -14.01036 -13.58469 -13.11988 -12.81631 -12.36053 -12.27313 -12.08408 -11.81665 -11.41535 -11.25743 -11.06663 -10.59854 -9.48383 -9.13478 -8.21902 -6.57005 0.75652 1.00145 1.40137 1.58864 1.80593 1.86762 2.21891 2.66249 3.17146 3.46373 4.29192 4.50779 4.73538 4.77021 4.96851 4.98492 5.21828 5.31962 5.46887 5.60863 5.71866 5.93228 6.04808 6.40040 6.48204 6.80119 6.83643 7.15434 8.01362 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.016899 C = 0.010985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.251135 B = 1656.474900 C = 2548.325305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.010 4.010 3 C -0.292 4.292 4 C 0.255 3.745 5 N -0.869 5.869 6 C -0.231 4.231 7 Cl -0.110 7.110 8 C 0.115 3.885 9 C -0.532 4.532 10 H 0.055 0.945 11 C 0.012 3.988 12 N -0.842 5.842 13 Si 1.107 2.893 14 H -0.253 1.253 15 H -0.264 1.264 16 H -0.285 1.285 17 C -0.297 4.297 18 H 0.080 0.920 19 H 0.084 0.916 20 H 0.063 0.937 21 H 0.137 0.863 22 H 0.407 0.593 23 H 0.396 0.604 24 H 0.277 0.723 25 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.276 10.429 -1.082 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.011 4.011 3 C -0.315 4.315 4 C 0.149 3.851 5 N -0.411 5.411 6 C -0.263 4.263 7 Cl -0.082 7.082 8 C 0.111 3.889 9 C -0.561 4.561 10 H 0.073 0.927 11 C -0.202 4.202 12 N -0.466 5.466 13 Si 0.928 3.072 14 H -0.178 1.178 15 H -0.189 1.189 16 H -0.212 1.212 17 C -0.318 4.318 18 H 0.099 0.901 19 H 0.103 0.897 20 H 0.082 0.918 21 H 0.155 0.845 22 H 0.237 0.763 23 H 0.225 0.775 24 H 0.087 0.913 25 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.125 9.455 -1.937 11.430 hybrid contribution 2.329 0.668 1.304 2.751 sum -3.796 10.123 -0.632 10.830 Atomic orbital electron populations 1.20835 0.89588 1.03194 1.03001 1.19761 0.96773 0.91978 0.92584 1.20117 0.90321 0.97955 1.23081 1.17410 0.91627 0.84876 0.91164 1.42392 1.09050 1.04388 1.85234 1.20473 0.81785 0.93962 1.30087 1.98166 1.13356 1.98544 1.98111 1.17540 0.92407 0.91531 0.87394 1.20610 1.04527 0.95522 1.35480 0.92711 1.28314 1.03559 0.90679 0.97626 1.70616 1.20260 1.25266 1.30443 0.83186 0.73101 0.76471 0.74420 1.17831 1.18889 1.21246 1.20891 0.92767 0.97704 1.20392 0.90136 0.89685 0.91836 0.84529 0.76294 0.77460 0.91282 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.15 10.00 71.24 0.71 -2.44 15 2 C -0.01 -0.39 5.87 -19.93 -0.12 -0.51 15 3 C -0.29 -10.77 9.54 22.58 0.22 -10.55 15 4 C 0.26 10.19 6.74 38.16 0.26 10.44 15 5 N -0.87 -26.49 9.05 -51.40 -0.46 -26.96 15 6 C -0.23 -10.94 6.39 22.93 0.15 -10.80 15 7 Cl -0.11 -4.83 26.27 -2.72 -0.07 -4.90 15 8 C 0.12 5.99 5.13 -21.29 -0.11 5.88 15 9 C -0.53 -30.08 8.85 23.45 0.21 -29.87 15 10 H 0.05 3.31 7.37 -2.91 -0.02 3.28 15 11 C 0.01 0.65 5.42 85.25 0.46 1.11 15 12 N -0.84 -47.50 13.66 21.82 0.30 -47.21 15 13 Si 1.11 49.79 24.90 68.60 1.71 51.50 15 14 H -0.25 -10.30 6.44 99.48 0.64 -9.66 15 15 H -0.26 -11.84 7.02 99.48 0.70 -11.14 15 16 H -0.29 -12.33 7.11 99.48 0.71 -11.62 15 17 C -0.30 -13.93 6.90 22.74 0.16 -13.77 15 18 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 19 H 0.08 1.98 8.08 -2.39 -0.02 1.96 15 20 H 0.06 1.78 8.08 -2.39 -0.02 1.76 15 21 H 0.14 4.03 8.06 -2.91 -0.02 4.00 15 22 H 0.41 9.45 8.84 -92.71 -0.82 8.63 15 23 H 0.40 11.77 7.49 -92.71 -0.69 11.07 15 24 H 0.28 15.56 8.73 -92.71 -0.81 14.75 15 25 H 0.11 4.95 4.40 -2.91 -0.01 4.94 15 Total: -1.00 -61.04 228.48 3.01 -58.04 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.39 Total: 20.02 kcal Atomic # 6 Polarization: -52.43 SS G_CDS: 1.93 Total: -50.50 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -0.17 Total: -74.16 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 1.71 Total: 51.50 kcal Atomic # 17 Polarization: -4.83 SS G_CDS: -0.07 Total: -4.90 kcal Total: -61.04 3.01 -58.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716203.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.161 kcal (2) G-P(sol) polarization free energy of solvation -61.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds