Wall clock time and date at job start Mon Mar 30 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36445 * 119.71090 * 2 1 4 4 C 1.40722 * 119.96199 * 180.02562 * 3 2 1 5 5 C 1.41019 * 120.28712 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99552 * 153.67044 * 5 4 3 7 7 C 1.39905 * 120.00250 * 333.67879 * 5 4 3 8 8 N 1.30892 * 119.99998 * 343.96184 * 7 5 4 9 9 Si 1.86806 * 120.00030 * 163.96757 * 7 5 4 10 10 H 1.48493 * 109.47054 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47235 * 119.99992 * 9 7 5 12 12 H 1.48498 * 109.46809 * 239.99539 * 9 7 5 13 13 C 1.41599 * 119.41865 * 359.97438 * 4 3 2 14 14 N 1.38750 * 120.28124 * 180.02562 * 13 4 3 15 15 C 1.38630 * 119.43042 * 0.02562 * 13 4 3 16 16 C 1.38363 * 120.02011 * 359.97438 * 15 13 4 17 17 Cl 1.73595 * 119.70423 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.47294 * 90.00235 * 1 2 3 19 19 H 1.09007 * 109.47025 * 209.99764 * 1 2 3 20 20 H 1.09004 * 109.47272 * 329.99998 * 1 2 3 21 21 H 1.07992 * 120.01934 * 0.04177 * 3 2 1 22 22 H 0.97009 * 120.00154 * 180.02562 * 8 7 5 23 23 H 0.97001 * 119.99961 * 179.97438 * 14 13 4 24 24 H 0.97005 * 120.00292 * 359.97438 * 14 13 4 25 25 H 1.08007 * 119.98730 * 179.72079 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1832 1.1851 0.0000 4 6 3.5904 1.1912 -0.0005 5 6 4.2962 2.4121 -0.0011 6 1 5.2924 2.4600 0.4134 7 6 3.7061 3.5611 -0.5383 8 7 2.6551 3.4567 -1.3115 9 14 4.4181 5.2445 -0.1524 10 1 5.5965 5.0912 0.7381 11 1 4.8338 5.9074 -1.4146 12 1 3.3897 6.0732 0.5263 13 6 4.2913 -0.0391 -0.0005 14 7 5.6787 -0.0539 -0.0005 15 6 3.5794 -1.2286 -0.0005 16 6 2.1959 -1.2074 0.0000 17 17 1.3127 -2.7018 0.0007 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8901 0.5138 20 1 -0.3634 0.8900 0.5138 21 1 1.6388 2.1178 0.0007 22 1 2.2460 4.2534 -1.6843 23 1 6.1547 -0.8991 -0.0002 24 1 6.1727 0.7809 -0.0009 25 1 4.1049 -2.1722 -0.0051 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716925.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:23 Heat of formation + Delta-G solvation = -19.347654 kcal Electronic energy + Delta-G solvation = -11654.348232 eV Core-core repulsion = 9463.832121 eV Total energy + Delta-G solvation = -2190.516111 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86096 -37.13106 -35.42382 -35.35876 -31.33805 -31.28577 -27.37449 -26.03656 -23.15725 -21.47408 -18.86292 -17.82922 -17.50200 -16.57575 -15.49125 -15.05569 -14.69493 -14.61443 -14.24505 -13.46269 -13.29148 -13.06792 -12.82728 -12.71419 -12.44191 -12.12483 -11.85076 -11.46023 -11.25306 -10.98811 -10.55889 -9.20107 -8.60807 -8.09507 -6.09062 0.87586 1.22967 1.42882 1.49851 1.56327 1.73953 2.24818 2.76055 3.60032 3.71378 4.37543 4.52969 4.72162 4.94884 5.05982 5.13206 5.27583 5.39879 5.58298 5.61560 5.90897 6.14767 6.26190 6.56616 6.88292 6.95221 7.21312 7.48609 8.42902 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.044077 B = 0.010220 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.099416 B = 2738.973482 C = 3293.899665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.116 4.116 3 C -0.154 4.154 4 C 0.035 3.965 5 C -0.485 4.485 6 H 0.081 0.919 7 C 0.033 3.967 8 N -0.830 5.830 9 Si 0.979 3.021 10 H -0.256 1.256 11 H -0.271 1.271 12 H -0.271 1.271 13 C 0.119 3.881 14 N -0.869 5.869 15 C -0.178 4.178 16 C -0.105 4.105 17 Cl -0.103 7.103 18 H 0.059 0.941 19 H 0.068 0.932 20 H 0.057 0.943 21 H 0.108 0.892 22 H 0.284 0.716 23 H 0.395 0.605 24 H 0.396 0.604 25 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 -2.754 1.861 3.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.175 4.175 4 C 0.030 3.970 5 C -0.515 4.515 6 H 0.099 0.901 7 C -0.180 4.180 8 N -0.457 5.457 9 Si 0.801 3.199 10 H -0.180 1.180 11 H -0.197 1.197 12 H -0.196 1.196 13 C 0.015 3.985 14 N -0.411 5.411 15 C -0.203 4.203 16 C -0.133 4.133 17 Cl -0.075 7.075 18 H 0.077 0.923 19 H 0.087 0.913 20 H 0.076 0.924 21 H 0.126 0.874 22 H 0.095 0.905 23 H 0.224 0.776 24 H 0.226 0.774 25 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.698 -2.745 1.717 3.312 hybrid contribution 0.448 0.597 -0.095 0.752 sum 1.146 -2.149 1.622 2.926 Atomic orbital electron populations 1.20608 0.91119 1.01931 1.01442 1.19269 0.96352 0.91577 1.04665 1.20595 0.93959 0.95810 1.07151 1.17688 0.92609 0.91848 0.94847 1.19467 1.02562 0.93416 1.36104 0.90139 1.26630 0.94723 1.04540 0.92154 1.69913 1.19984 1.32553 1.23262 0.85199 0.79175 0.76697 0.78851 1.17988 1.19653 1.19587 1.17899 0.85213 0.92672 1.02685 1.41742 1.02256 1.10179 1.86962 1.20004 0.92061 0.96220 1.12016 1.19987 0.91135 0.84614 1.17549 1.98205 1.76772 1.34758 1.97757 0.92255 0.91279 0.92393 0.87428 0.90525 0.77637 0.77445 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.67 9.59 71.23 0.68 -2.99 15 2 C -0.12 -5.42 5.85 -20.10 -0.12 -5.54 15 3 C -0.15 -7.98 8.24 22.46 0.18 -7.80 15 4 C 0.03 1.81 5.57 -21.16 -0.12 1.69 15 5 C -0.49 -24.59 8.48 23.36 0.20 -24.39 15 6 H 0.08 3.82 6.72 -2.91 -0.02 3.80 15 7 C 0.03 1.62 5.16 85.24 0.44 2.06 15 8 N -0.83 -42.72 10.97 21.82 0.24 -42.48 15 9 Si 0.98 37.23 29.59 68.60 2.03 39.26 15 10 H -0.26 -9.39 7.11 99.48 0.71 -8.69 15 11 H -0.27 -10.03 7.11 99.48 0.71 -9.33 15 12 H -0.27 -10.12 7.11 99.48 0.71 -9.41 15 13 C 0.12 5.47 6.79 38.97 0.26 5.74 15 14 N -0.87 -32.54 8.98 -50.42 -0.45 -32.99 15 15 C -0.18 -7.80 9.65 22.39 0.22 -7.59 15 16 C -0.10 -4.65 6.33 22.49 0.14 -4.51 15 17 Cl -0.10 -3.82 27.23 -2.72 -0.07 -3.90 15 18 H 0.06 2.22 8.14 -2.39 -0.02 2.20 15 19 H 0.07 2.44 6.86 -2.38 -0.02 2.42 15 20 H 0.06 2.15 8.07 -2.39 -0.02 2.13 15 21 H 0.11 5.86 6.22 -2.91 -0.02 5.84 15 22 H 0.28 13.34 8.30 -92.70 -0.77 12.57 15 23 H 0.40 12.06 8.84 -92.71 -0.82 11.24 15 24 H 0.40 14.50 7.07 -92.70 -0.66 13.84 15 25 H 0.12 4.58 8.06 -2.91 -0.02 4.56 15 Total: -1.00 -55.65 232.03 3.40 -52.26 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.24 Total: 31.17 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 1.89 Total: -43.31 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -0.21 Total: -75.47 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Atomic # 17 Polarization: -3.82 SS G_CDS: -0.07 Total: -3.90 kcal Total: -55.65 3.40 -52.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716925.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.909 kcal (2) G-P(sol) polarization free energy of solvation -55.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds