Wall clock time and date at job start Mon Mar 30 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47328 * 2 1 4 4 C 1.53004 * 109.47219 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47338 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47448 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.41056 * 304.85721 * 6 5 4 8 8 C 1.52957 * 109.35675 * 64.68333 * 6 5 4 9 9 C 1.53227 * 109.40441 * 183.67069 * 8 6 5 10 10 C 1.51267 * 108.53824 * 305.37177 * 9 8 6 11 11 C 1.37881 * 120.84887 * 231.37095 * 10 9 8 12 12 N 1.31507 * 120.00110 * 348.85101 * 11 10 9 13 13 Si 1.86803 * 119.99804 * 168.84971 * 11 10 9 14 14 H 1.48502 * 109.46876 * 354.66382 * 13 11 10 15 15 H 1.48504 * 109.46853 * 114.65842 * 13 11 10 16 16 H 1.48497 * 109.47046 * 234.65886 * 13 11 10 17 17 C 1.51268 * 118.29836 * 51.35020 * 10 9 8 18 18 C 1.52959 * 109.41547 * 185.00123 * 6 5 4 19 19 H 1.08993 * 109.47674 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47361 * 300.00751 * 1 2 3 21 21 H 1.08999 * 109.46918 * 59.99725 * 1 2 3 22 22 H 1.08997 * 109.47127 * 239.99922 * 2 1 3 23 23 H 1.09002 * 109.46866 * 119.99511 * 2 1 3 24 24 H 1.08997 * 109.47080 * 59.99894 * 3 2 1 25 25 H 1.09002 * 109.46747 * 299.99583 * 3 2 1 26 26 H 1.09001 * 109.46854 * 59.99559 * 4 3 2 27 27 H 1.08999 * 109.47064 * 300.00297 * 4 3 2 28 28 H 1.09003 * 109.47132 * 59.99614 * 5 4 3 29 29 H 1.09006 * 109.47465 * 300.00742 * 5 4 3 30 30 H 1.09004 * 109.48241 * 303.64910 * 8 6 5 31 31 H 1.08998 * 109.48128 * 63.67417 * 8 6 5 32 32 H 1.09000 * 109.62616 * 65.09229 * 9 8 6 33 33 H 1.09002 * 109.62575 * 185.65430 * 9 8 6 34 34 H 0.96997 * 120.00116 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.62428 * 188.94271 * 17 10 9 36 36 H 1.08989 * 109.62880 * 68.36585 * 17 10 9 37 37 H 1.09002 * 109.48502 * 296.34687 * 18 6 5 38 38 H 1.09005 * 109.48074 * 56.39011 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 1 5.9723 2.2977 0.8438 8 6 6.1170 2.2672 -1.3042 9 6 7.6465 2.1826 -1.2667 10 6 8.1973 3.5607 -0.9743 11 6 9.1748 4.1155 -1.7730 12 7 9.7954 3.3737 -2.6640 13 14 9.6174 5.9211 -1.5894 14 1 8.6942 6.5607 -0.6179 15 1 11.0136 6.0409 -1.0980 16 1 9.4963 6.5967 -2.9062 17 6 7.6481 4.3147 0.2165 18 6 6.1185 4.3220 0.1251 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5140 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 1.8932 -0.5138 0.8901 24 1 1.6767 1.9563 0.8899 25 1 1.6767 1.9563 -0.8901 26 1 3.9337 0.9284 -0.8891 27 1 3.9330 0.9287 0.8908 28 1 3.7164 3.3993 0.8895 29 1 3.7171 3.3983 -0.8904 30 1 5.7003 1.2665 -1.4186 31 1 5.8076 2.8881 -2.1449 32 1 7.9558 1.4908 -0.4832 33 1 8.0179 1.8370 -2.2314 34 1 10.4832 3.7639 -3.2256 35 1 8.0204 5.3391 0.2046 36 1 7.9575 3.8204 1.1373 37 1 5.8092 4.8945 -0.7494 38 1 5.7029 4.7777 1.0239 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585669764.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:30 Heat of formation + Delta-G solvation = -70.135285 kcal Electronic energy + Delta-G solvation = -14163.968722 eV Core-core repulsion = 12003.466324 eV Total energy + Delta-G solvation = -2160.502398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.24161 -36.76996 -34.72255 -32.72637 -31.29748 -29.82015 -26.57304 -23.80561 -23.41924 -21.97717 -21.55903 -20.60942 -18.03924 -16.55538 -16.39729 -15.54018 -15.15243 -14.80188 -14.54440 -14.48234 -14.26846 -13.81438 -13.59992 -13.02243 -12.96487 -12.68665 -12.64266 -12.37280 -12.06313 -11.84158 -11.78311 -11.51535 -11.43659 -11.26534 -11.23876 -11.11147 -10.54700 -10.40496 -10.26016 -8.16052 -6.07206 1.37354 1.41431 1.50643 2.42662 3.10214 3.85534 4.05263 4.19245 4.22084 4.32509 4.43838 4.52122 4.71649 4.79759 4.83088 4.88748 4.91272 5.01636 5.06694 5.10827 5.14561 5.16690 5.18418 5.26599 5.34272 5.37250 5.44071 5.48487 5.55976 5.61362 5.65980 5.68476 5.72497 5.84217 5.95963 6.42015 6.98897 7.49519 8.95560 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.063128 B = 0.006071 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.433563 B = 4610.794686 C = 4863.013277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.070 4.070 7 H 0.051 0.949 8 C -0.094 4.094 9 C 0.004 3.996 10 C -0.496 4.496 11 C 0.014 3.986 12 N -0.935 5.935 13 Si 0.934 3.066 14 H -0.235 1.235 15 H -0.284 1.284 16 H -0.288 1.288 17 C -0.030 4.030 18 C -0.100 4.100 19 H 0.058 0.942 20 H 0.057 0.943 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.034 0.966 32 H -0.008 1.008 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.039 0.961 36 H 0.015 0.985 37 H 0.042 0.958 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.420 -1.850 5.968 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.156 4.156 5 C -0.143 4.143 6 C -0.089 4.089 7 H 0.070 0.930 8 C -0.131 4.131 9 C -0.033 4.033 10 C -0.515 4.515 11 C -0.183 4.183 12 N -0.576 5.576 13 Si 0.760 3.240 14 H -0.158 1.158 15 H -0.210 1.210 16 H -0.215 1.215 17 C -0.067 4.067 18 C -0.138 4.138 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.010 0.990 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.300 -1.847 5.837 16.479 hybrid contribution 0.964 0.599 -0.462 1.226 sum -14.336 -1.248 5.375 15.361 Atomic orbital electron populations 1.21765 0.95137 1.01919 1.01957 1.21550 0.96453 0.96634 1.01822 1.21588 0.94505 0.97054 1.02037 1.21626 0.95847 0.96505 1.01617 1.21595 0.93948 0.97109 1.01674 1.20927 0.94898 0.96136 0.96927 0.93003 1.21545 0.96391 0.98269 0.96925 1.19374 0.93148 0.95081 0.95713 1.20726 1.18548 1.01494 1.10762 1.25699 0.95538 1.01715 0.95354 1.70052 1.25475 1.37253 1.24811 0.85855 0.78323 0.81732 0.78048 1.15848 1.21007 1.21470 1.19996 0.94410 0.96879 0.95455 1.21553 0.96470 0.96154 0.99630 0.92272 0.92412 0.92749 0.92570 0.92065 0.91599 0.92257 0.92790 0.92340 0.91376 0.92638 0.93300 0.94740 0.98989 0.96702 0.93020 0.94296 0.96647 0.93923 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.13 -2.37 5.93 30.59 0.18 -2.19 16 3 C -0.11 -2.37 5.21 30.60 0.16 -2.22 16 4 C -0.12 -3.03 4.97 30.59 0.15 -2.88 16 5 C -0.11 -3.05 4.68 30.59 0.14 -2.90 16 6 C -0.07 -2.60 2.09 -10.82 -0.02 -2.63 16 7 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 8 C -0.09 -4.01 5.05 30.66 0.15 -3.86 16 9 C 0.00 0.23 5.93 30.10 0.18 0.41 16 10 C -0.50 -27.13 5.48 -16.17 -0.09 -27.22 16 11 C 0.01 0.81 5.44 84.66 0.46 1.27 16 12 N -0.94 -57.18 12.82 21.45 0.28 -56.90 16 13 Si 0.93 43.79 27.95 68.60 1.92 45.70 16 14 H -0.23 -10.08 5.58 99.48 0.56 -9.52 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 17 C -0.03 -1.40 5.65 30.11 0.17 -1.23 16 18 C -0.10 -3.95 5.22 30.66 0.16 -3.79 16 19 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 20 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 21 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.50 6.47 -2.39 -0.02 1.48 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.05 1.89 6.38 -2.38 -0.02 1.88 16 31 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 32 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.01 0.85 7.19 -2.39 -0.02 0.83 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.04 1.78 4.36 -2.39 -0.01 1.76 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -60.79 289.10 5.38 -55.41 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 0.83 Total: 4.66 kcal Atomic # 6 Polarization: -51.24 SS G_CDS: 2.36 Total: -48.87 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.28 Total: -56.90 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.92 Total: 45.70 kcal Total: -60.79 5.38 -55.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585669764.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.726 kcal (2) G-P(sol) polarization free energy of solvation -60.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds