Wall clock time and date at job start Mon Mar 30 2020 02:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.45560 * 111.12425 * 2 1 4 4 C 1.53292 * 108.85772 * 171.24069 * 3 2 1 5 5 C 1.53001 * 108.23037 * 62.13921 * 4 3 2 6 6 C 1.51418 * 110.81652 * 302.93161 * 5 4 3 7 7 H 1.08995 * 108.79104 * 171.94078 * 6 5 4 8 8 C 1.46829 * 111.00044 * 233.14573 * 2 1 3 9 9 H 1.09005 * 112.93330 * 54.28533 * 8 2 1 10 10 C 1.55913 * 106.55728 * 289.97305 * 8 2 1 11 11 C 1.54461 * 102.68715 * 281.09053 * 10 8 2 12 12 N 1.46926 * 112.28496 * 292.21428 * 6 5 4 13 13 C 1.36938 * 126.18288 * 328.68216 * 12 6 5 14 14 H 1.08000 * 119.99756 * 359.90648 * 13 12 6 15 15 C 1.38814 * 120.00330 * 179.97438 * 13 12 6 16 16 N 1.31624 * 119.99708 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00305 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47142 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47455 * 119.99232 * 17 15 13 20 20 H 1.48505 * 109.47000 * 239.99637 * 17 15 13 21 21 H 1.08997 * 109.47042 * 186.84964 * 1 2 3 22 22 H 1.09007 * 109.46678 * 306.84957 * 1 2 3 23 23 H 1.08997 * 109.46752 * 66.84468 * 1 2 3 24 24 H 1.09004 * 109.74311 * 51.29200 * 3 2 1 25 25 H 1.09004 * 109.41924 * 290.99888 * 3 2 1 26 26 H 1.09002 * 109.70986 * 302.45134 * 4 3 2 27 27 H 1.08997 * 109.74282 * 181.84031 * 4 3 2 28 28 H 1.09007 * 109.20470 * 182.58799 * 5 4 3 29 29 H 1.09003 * 109.20973 * 63.27991 * 5 4 3 30 30 H 1.08998 * 110.76753 * 162.79033 * 10 8 2 31 31 H 1.09003 * 110.76308 * 39.38903 * 10 8 2 32 32 H 1.09002 * 109.90106 * 96.65838 * 11 10 8 33 33 H 1.09001 * 109.89593 * 217.71209 * 11 10 8 34 34 H 0.96997 * 119.99692 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9936 1.3578 0.0000 4 6 3.5095 1.3033 0.2209 5 6 4.1361 0.5381 -0.9465 6 6 3.5351 -0.8465 -1.0668 7 1 3.8957 -1.3071 -1.9864 8 6 1.9952 -0.8222 -1.0968 9 1 1.6003 -0.5337 -2.0710 10 6 1.6778 -2.3046 -0.7327 11 6 2.7804 -2.6452 0.2941 12 7 3.8971 -1.7113 0.0645 13 6 5.0628 -1.6594 0.7811 14 1 5.8200 -0.9319 0.5285 15 6 5.2719 -2.5426 1.8314 16 7 4.3494 -3.4297 2.1388 17 14 6.8624 -2.4723 2.8084 18 1 7.7290 -1.3948 2.2666 19 1 6.5557 -2.1914 4.2340 20 1 7.5673 -3.7749 2.7011 21 1 -0.3633 -1.0203 0.1226 22 1 -0.3633 0.6164 0.8224 23 1 -0.3633 0.4041 -0.9449 24 1 1.5278 1.9325 0.8006 25 1 1.7806 1.8286 -0.9598 26 1 3.7263 0.7883 1.1568 27 1 3.9131 2.3152 0.2561 28 1 5.2101 0.4498 -0.7821 29 1 3.9596 1.0873 -1.8713 30 1 1.7575 -2.9441 -1.6118 31 1 0.6895 -2.3884 -0.2807 32 1 2.3956 -2.5218 1.3064 33 1 3.1188 -3.6710 0.1485 34 1 4.4954 -4.0467 2.8729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720347665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:18 Heat of formation + Delta-G solvation = 35.695047 kcal Electronic energy + Delta-G solvation = -15144.884286 eV Core-core repulsion = 12885.430693 eV Total energy + Delta-G solvation = -2259.453594 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.22725 -35.04058 -33.10125 -31.94810 -28.61253 -27.87822 -25.91341 -24.29562 -22.24029 -21.40937 -19.69807 -18.35244 -16.22565 -15.51250 -14.88759 -14.59572 -14.28848 -13.69925 -13.57830 -12.73071 -12.29346 -12.15949 -11.97509 -11.54617 -11.29734 -11.10679 -10.87224 -10.76228 -10.45001 -10.29674 -9.94123 -9.78483 -9.55557 -9.49486 -9.31083 -8.43832 -7.62817 -6.62324 -5.56025 -2.86155 3.47341 3.52438 3.54935 4.44107 4.61098 5.23561 5.38681 5.50126 5.61966 5.63214 5.75472 5.81486 5.88707 5.96047 6.05583 6.08950 6.14275 6.26876 6.32471 6.46085 6.62250 6.64597 6.78181 6.83722 7.00167 7.16542 7.69682 7.72318 7.82216 7.88466 8.03636 8.42820 9.37773 9.99535 10.69151 11.56416 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037851 B = 0.012134 C = 0.010734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.570348 B = 2307.056880 C = 2607.839097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.525 5.525 3 C 0.069 3.931 4 C -0.109 4.109 5 C -0.117 4.117 6 C 0.172 3.828 7 H 0.019 0.981 8 C 0.072 3.928 9 H 0.044 0.956 10 C -0.141 4.141 11 C 0.191 3.809 12 N -0.585 5.585 13 C -0.213 4.213 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.921 5.921 17 Si 0.905 3.095 18 H -0.282 1.282 19 H -0.293 1.293 20 H -0.293 1.293 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.013 0.987 24 H 0.064 0.936 25 H 0.017 0.983 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.034 0.966 34 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 7.038 -5.605 10.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.250 5.250 3 C -0.059 4.059 4 C -0.147 4.147 5 C -0.156 4.156 6 C 0.064 3.936 7 H 0.036 0.964 8 C -0.037 4.037 9 H 0.062 0.938 10 C -0.180 4.180 11 C 0.066 3.934 12 N -0.310 5.310 13 C -0.341 4.341 14 H 0.094 0.906 15 C -0.207 4.207 16 N -0.569 5.569 17 Si 0.737 3.263 18 H -0.207 1.207 19 H -0.220 1.220 20 H -0.220 1.220 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.031 0.969 24 H 0.082 0.918 25 H 0.035 0.965 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.628 6.707 -5.003 10.084 hybrid contribution 0.494 0.372 -0.161 0.639 sum -5.134 7.079 -5.164 10.156 Atomic orbital electron populations 1.22335 0.88461 1.02038 0.99054 1.60851 1.05893 1.12483 1.45746 1.21775 0.96618 0.89046 0.98479 1.21514 0.93377 0.98626 1.01205 1.21349 1.00997 0.96416 0.96818 1.20490 0.90298 0.90828 0.92012 0.96389 1.22896 0.96828 0.93793 0.90178 0.93814 1.23201 1.00681 0.94023 1.00073 1.21036 0.84651 0.92531 0.95171 1.44283 1.16545 1.35832 1.34384 1.18991 0.92380 1.13968 1.08789 0.90582 1.24732 0.98001 0.98733 0.99186 1.69986 1.33082 1.22486 1.31345 0.86131 0.83051 0.77077 0.80063 1.20698 1.21994 1.22044 0.91317 0.92139 0.96864 0.91775 0.96529 0.89363 0.93123 0.91685 0.93906 0.92868 0.91904 0.93337 0.94746 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.40 60.06 0.56 1.00 16 2 N -0.53 -9.63 4.23 -233.35 -0.99 -10.62 16 3 C 0.07 1.15 5.46 -4.40 -0.02 1.12 16 4 C -0.11 -1.99 6.09 -26.58 -0.16 -2.16 16 5 C -0.12 -2.23 5.12 -27.53 -0.14 -2.37 16 6 C 0.17 3.66 3.05 -67.96 -0.21 3.46 16 7 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 8 C 0.07 1.36 3.09 -65.65 -0.20 1.16 16 9 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 10 C -0.14 -2.80 6.37 -24.41 -0.16 -2.95 16 11 C 0.19 4.81 5.24 -2.80 -0.01 4.79 16 12 N -0.59 -15.04 3.22 -164.04 -0.53 -15.57 16 13 C -0.21 -5.92 9.30 -15.06 -0.14 -6.06 16 14 H 0.08 2.06 6.61 -52.49 -0.35 1.71 16 15 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 16 N -0.92 -27.68 10.36 55.49 0.58 -27.11 16 17 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H 0.07 1.02 6.18 -51.93 -0.32 0.70 16 22 H 0.06 0.83 8.01 -51.93 -0.42 0.41 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 24 H 0.06 0.98 8.00 -51.93 -0.42 0.57 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 1.95 7.72 -51.93 -0.40 1.55 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.31 6.82 -51.93 -0.35 0.95 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.15 6.03 -51.93 -0.31 0.84 16 32 H 0.05 1.38 7.39 -51.93 -0.38 0.99 16 33 H 0.03 0.96 7.54 -51.93 -0.39 0.57 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 256.92 15.07 3.87 3.87 Total: -1.00 -30.19 256.92 -8.11 -38.29 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -5.44 Total: -4.01 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.58 Total: -2.41 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.94 Total: -53.30 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.19 -8.11 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720347665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.988 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds