Wall clock time and date at job start Mon Mar 30 2020 02:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.45560 * 111.12425 * 2 1 4 4 C 1.53292 * 108.85772 * 171.24069 * 3 2 1 5 5 C 1.53001 * 108.23037 * 62.13921 * 4 3 2 6 6 C 1.51418 * 110.81652 * 302.93161 * 5 4 3 7 7 H 1.08995 * 108.79104 * 171.94078 * 6 5 4 8 8 C 1.46829 * 111.00044 * 233.14573 * 2 1 3 9 9 H 1.09005 * 112.93330 * 54.28533 * 8 2 1 10 10 C 1.55913 * 106.55728 * 289.97305 * 8 2 1 11 11 C 1.54461 * 102.68715 * 281.09053 * 10 8 2 12 12 N 1.46926 * 112.28496 * 292.21428 * 6 5 4 13 13 C 1.36938 * 126.18288 * 328.68216 * 12 6 5 14 14 H 1.08000 * 119.99756 * 359.90648 * 13 12 6 15 15 C 1.38814 * 120.00330 * 179.97438 * 13 12 6 16 16 N 1.31624 * 119.99708 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00305 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47142 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47455 * 119.99232 * 17 15 13 20 20 H 1.48505 * 109.47000 * 239.99637 * 17 15 13 21 21 H 1.08997 * 109.47042 * 186.84964 * 1 2 3 22 22 H 1.09007 * 109.46678 * 306.84957 * 1 2 3 23 23 H 1.08997 * 109.46752 * 66.84468 * 1 2 3 24 24 H 1.09004 * 109.74311 * 51.29200 * 3 2 1 25 25 H 1.09004 * 109.41924 * 290.99888 * 3 2 1 26 26 H 1.09002 * 109.70986 * 302.45134 * 4 3 2 27 27 H 1.08997 * 109.74282 * 181.84031 * 4 3 2 28 28 H 1.09007 * 109.20470 * 182.58799 * 5 4 3 29 29 H 1.09003 * 109.20973 * 63.27991 * 5 4 3 30 30 H 1.08998 * 110.76753 * 162.79033 * 10 8 2 31 31 H 1.09003 * 110.76308 * 39.38903 * 10 8 2 32 32 H 1.09002 * 109.90106 * 96.65838 * 11 10 8 33 33 H 1.09001 * 109.89593 * 217.71209 * 11 10 8 34 34 H 0.96997 * 119.99692 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9936 1.3578 0.0000 4 6 3.5095 1.3033 0.2209 5 6 4.1361 0.5381 -0.9465 6 6 3.5351 -0.8465 -1.0668 7 1 3.8957 -1.3071 -1.9864 8 6 1.9952 -0.8222 -1.0968 9 1 1.6003 -0.5337 -2.0710 10 6 1.6778 -2.3046 -0.7327 11 6 2.7804 -2.6452 0.2941 12 7 3.8971 -1.7113 0.0645 13 6 5.0628 -1.6594 0.7811 14 1 5.8200 -0.9319 0.5285 15 6 5.2719 -2.5426 1.8314 16 7 4.3494 -3.4297 2.1388 17 14 6.8624 -2.4723 2.8084 18 1 7.7290 -1.3948 2.2666 19 1 6.5557 -2.1914 4.2340 20 1 7.5673 -3.7749 2.7011 21 1 -0.3633 -1.0203 0.1226 22 1 -0.3633 0.6164 0.8224 23 1 -0.3633 0.4041 -0.9449 24 1 1.5278 1.9325 0.8006 25 1 1.7806 1.8286 -0.9598 26 1 3.7263 0.7883 1.1568 27 1 3.9131 2.3152 0.2561 28 1 5.2101 0.4498 -0.7821 29 1 3.9596 1.0873 -1.8713 30 1 1.7575 -2.9441 -1.6118 31 1 0.6895 -2.3884 -0.2807 32 1 2.3956 -2.5218 1.3064 33 1 3.1188 -3.6710 0.1485 34 1 4.4954 -4.0467 2.8729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720347665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:17 Heat of formation + Delta-G solvation = 15.664261 kcal Electronic energy + Delta-G solvation = -15145.752886 eV Core-core repulsion = 12885.430693 eV Total energy + Delta-G solvation = -2260.322194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78077 -36.73707 -34.59449 -33.92952 -30.51020 -29.49331 -27.23731 -26.31086 -23.74301 -22.98426 -21.49341 -19.96614 -18.23261 -17.03781 -16.64298 -16.19282 -15.83416 -15.45356 -15.19617 -14.27450 -13.91710 -13.79518 -13.44965 -13.20059 -12.87359 -12.82636 -12.59554 -12.45208 -12.16513 -11.98944 -11.87393 -11.53587 -11.38518 -11.12785 -10.89326 -10.59854 -8.91680 -8.72390 -7.74101 -5.04989 1.46110 1.47071 1.56623 2.55096 3.12930 3.44720 3.63451 3.88336 4.03787 4.26764 4.27136 4.38147 4.45108 4.64244 4.66541 4.70931 4.76507 4.87514 4.93251 4.96948 5.05961 5.18192 5.22096 5.25890 5.45001 5.57410 5.66288 5.79084 5.92023 6.30944 6.43623 6.49569 7.21620 7.91634 8.59508 9.37823 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037851 B = 0.012134 C = 0.010734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.570348 B = 2307.056880 C = 2607.839097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.559 5.559 3 C 0.073 3.927 4 C -0.106 4.106 5 C -0.113 4.113 6 C 0.158 3.842 7 H 0.017 0.983 8 C 0.086 3.914 9 H 0.077 0.923 10 C -0.129 4.129 11 C 0.201 3.799 12 N -0.602 5.602 13 C -0.211 4.211 14 H 0.081 0.919 15 C -0.074 4.074 16 N -0.954 5.954 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.297 1.297 20 H -0.296 1.296 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.006 0.994 33 H -0.006 1.006 34 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 9.093 -7.100 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.284 5.284 3 C -0.055 4.055 4 C -0.144 4.144 5 C -0.152 4.152 6 C 0.051 3.949 7 H 0.034 0.966 8 C -0.023 4.023 9 H 0.095 0.905 10 C -0.168 4.168 11 C 0.076 3.924 12 N -0.327 5.327 13 C -0.341 4.341 14 H 0.098 0.902 15 C -0.266 4.266 16 N -0.605 5.605 17 Si 0.799 3.201 18 H -0.190 1.190 19 H -0.225 1.225 20 H -0.224 1.224 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.054 0.946 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.024 0.976 33 H 0.012 0.988 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.365 8.799 -6.533 12.673 hybrid contribution 0.714 -0.239 0.262 0.797 sum -5.651 8.560 -6.270 12.021 Atomic orbital electron populations 1.22343 0.86270 1.02267 1.00676 1.60776 1.08065 1.13561 1.46022 1.21770 0.94998 0.88492 1.00237 1.21456 0.95258 0.99288 0.98398 1.21308 0.99600 0.95475 0.98810 1.20787 0.92735 0.91379 0.89960 0.96601 1.22774 0.94635 0.92976 0.91895 0.90547 1.23074 0.99159 0.95568 0.98970 1.20718 0.86145 0.90711 0.94805 1.44522 1.16074 1.36918 1.35181 1.19327 0.93264 1.13067 1.08420 0.90170 1.25526 1.01185 0.99083 1.00784 1.70218 1.34953 1.23492 1.31842 0.85125 0.79712 0.77099 0.78200 1.19002 1.22466 1.22376 0.91763 0.91096 0.94611 0.90506 0.94031 0.94163 0.90390 0.93616 0.90409 0.91268 0.90292 0.97589 0.98766 0.94985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.40 127.69 1.20 2.04 16 2 N -0.56 -18.99 4.23 -892.18 -3.78 -22.77 16 3 C 0.07 2.16 5.46 86.65 0.47 2.64 16 4 C -0.11 -3.64 6.09 30.69 0.19 -3.46 16 5 C -0.11 -4.06 5.12 30.08 0.15 -3.90 16 6 C 0.16 6.51 3.05 44.74 0.14 6.65 16 7 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 8 C 0.09 3.01 3.09 46.29 0.14 3.15 16 9 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 10 C -0.13 -4.96 6.37 32.10 0.20 -4.75 16 11 C 0.20 10.47 5.24 86.71 0.45 10.92 16 12 N -0.60 -31.44 3.22 -672.91 -2.16 -33.60 16 13 C -0.21 -12.02 9.30 84.03 0.78 -11.23 16 14 H 0.08 4.38 6.61 -2.91 -0.02 4.36 16 15 C -0.07 -4.35 5.49 84.86 0.47 -3.89 16 16 N -0.95 -60.01 10.36 21.65 0.22 -59.79 16 17 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 20 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 21 H 0.06 1.73 6.18 -2.39 -0.01 1.72 16 22 H 0.07 1.71 8.01 -2.38 -0.02 1.69 16 23 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 2.09 8.00 -2.38 -0.02 2.07 16 25 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.04 1.76 7.72 -2.39 -0.02 1.75 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.78 6.82 -2.38 -0.02 1.77 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 2.77 6.03 -2.39 -0.01 2.75 16 32 H 0.01 0.35 7.39 -2.39 -0.02 0.33 16 33 H -0.01 -0.34 7.54 -2.39 -0.02 -0.36 16 34 H 0.24 14.80 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -67.65 256.92 1.57 -66.08 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.06 Total: 2.25 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 4.20 Total: -1.84 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -5.72 Total: -116.15 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -67.65 1.57 -66.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720347665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.744 kcal (2) G-P(sol) polarization free energy of solvation -67.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds