Wall clock time and date at job start Mon Mar 30 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38184 * 119.60992 * 2 1 4 4 C 1.38671 * 119.19221 * 179.77787 * 3 2 1 5 5 C 1.38610 * 118.43317 * 0.48905 * 4 3 2 6 6 C 1.50703 * 120.41971 * 179.72923 * 5 4 3 7 7 C 1.50697 * 109.47009 * 100.03023 * 6 5 4 8 8 H 1.08004 * 119.99991 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00082 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00013 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99843 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47033 * 59.99971 * 11 9 7 13 13 H 1.48502 * 109.46805 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47317 * 299.99834 * 11 9 7 15 15 C 1.38349 * 119.15480 * 359.75608 * 5 4 3 16 16 Cl 1.73594 * 119.63676 * 179.97438 * 15 5 4 17 17 N 1.31873 * 119.60639 * 180.27792 * 2 1 3 18 18 H 1.09001 * 109.46953 * 269.72059 * 1 2 3 19 19 H 1.09000 * 109.47318 * 29.71657 * 1 2 3 20 20 H 1.09000 * 109.47161 * 149.72288 * 1 2 3 21 21 H 1.08004 * 120.40444 * 0.02562 * 3 2 1 22 22 H 1.07996 * 120.78111 * 180.22649 * 4 3 2 23 23 H 1.09002 * 109.46913 * 220.02536 * 6 5 4 24 24 H 1.08997 * 109.47177 * 340.02493 * 6 5 4 25 25 H 0.96994 * 119.99877 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1898 1.2014 0.0000 4 6 3.5765 1.1913 0.0047 5 6 4.2276 -0.0324 -0.0012 6 6 5.7333 -0.0955 -0.0026 7 6 6.2258 -0.3700 1.3950 8 1 5.5192 -0.4866 2.2034 9 6 7.5784 -0.4723 1.6416 10 7 8.4389 -0.3309 0.6570 11 14 8.1889 -0.8118 3.3741 12 1 7.6389 -2.1073 3.8477 13 1 9.6726 -0.8754 3.3725 14 1 7.7406 0.2768 4.2791 15 6 3.4775 -1.1949 -0.0063 16 17 4.2800 -2.7342 -0.0143 17 7 2.1586 -1.1465 -0.0056 18 1 -0.3633 -0.0050 1.0277 19 1 -0.3634 0.8925 -0.5094 20 1 -0.3633 -0.8875 -0.5181 21 1 1.6500 2.1369 0.0004 22 1 4.1359 2.1150 0.0085 23 1 6.0628 -0.8941 -0.6673 24 1 6.1365 0.8557 -0.3497 25 1 9.3905 -0.4032 0.8305 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536169109.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:51 Heat of formation + Delta-G solvation = 9.040513 kcal Electronic energy + Delta-G solvation = -11437.608869 eV Core-core repulsion = 9248.323761 eV Total energy + Delta-G solvation = -2189.285108 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.77166 -35.87510 -34.13392 -32.23305 -31.67989 -29.10220 -25.92518 -23.29260 -22.65869 -20.75041 -16.45435 -16.40992 -15.79776 -14.89985 -14.30828 -14.22577 -13.04888 -12.74009 -12.67114 -12.14982 -12.05349 -11.69179 -11.32624 -10.85891 -10.79980 -10.66838 -10.23188 -9.87693 -9.67007 -9.06829 -8.97513 -8.42957 -7.94509 -6.06184 -4.09450 1.51201 1.75903 2.60501 3.31883 3.35879 3.39569 4.14920 4.44734 4.80086 5.13232 5.28453 5.40455 5.59402 5.66939 5.71699 5.82894 5.98251 6.33429 6.53508 6.67751 7.09495 7.45423 7.58291 7.87674 8.23694 8.27487 8.92643 9.53892 11.04074 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.040248 B = 0.009625 C = 0.008856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.520382 B = 2908.532929 C = 3160.975379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.106 3.894 3 C -0.172 4.172 4 C -0.074 4.074 5 C -0.072 4.072 6 C 0.051 3.949 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.172 3.828 16 Cl -0.027 7.027 17 N -0.486 5.486 18 H 0.072 0.928 19 H 0.070 0.930 20 H 0.072 0.928 21 H 0.131 0.869 22 H 0.139 0.861 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.006 1.885 -1.705 11.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.032 4.032 3 C -0.192 4.192 4 C -0.100 4.100 5 C -0.075 4.075 6 C 0.014 3.986 7 C -0.545 4.545 8 H 0.073 0.927 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.721 3.279 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.008 3.992 16 Cl 0.002 6.998 17 N -0.198 5.198 18 H 0.091 0.909 19 H 0.089 0.911 20 H 0.091 0.909 21 H 0.148 0.852 22 H 0.156 0.844 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.209 0.961 -1.752 11.386 hybrid contribution 0.988 0.441 1.004 1.476 sum -10.222 1.403 -0.748 10.345 Atomic orbital electron populations 1.20602 0.89101 1.02863 1.02604 1.20881 0.96319 0.87565 0.98431 1.21900 0.95044 0.98751 1.03476 1.21531 0.93623 0.98131 0.96744 1.21432 1.01066 0.90876 0.94113 1.18389 0.82517 0.99098 0.98621 1.20846 0.91551 1.49387 0.92674 0.92714 1.24928 0.96731 0.95131 0.97080 1.69932 1.02160 1.49751 1.31292 0.86625 0.77565 0.79068 0.84652 1.20052 1.21197 1.20201 1.21499 0.88739 0.88006 1.00942 1.98376 1.77107 1.28024 1.96293 1.66710 1.08797 1.30370 1.13896 0.90941 0.91071 0.90901 0.85157 0.84356 0.93901 0.94967 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 10.17 36.01 0.37 -0.74 15 2 C 0.11 1.75 6.78 -82.59 -0.56 1.19 15 3 C -0.17 -2.68 9.74 -39.44 -0.38 -3.06 15 4 C -0.07 -1.36 9.82 -39.28 -0.39 -1.75 15 5 C -0.07 -1.57 5.09 -104.44 -0.53 -2.10 15 6 C 0.05 1.28 4.58 -29.03 -0.13 1.15 15 7 C -0.51 -13.87 8.88 -34.44 -0.31 -14.17 15 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 15 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 15 10 N -0.89 -25.87 13.29 55.43 0.74 -25.14 15 11 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 15 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 15 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 15 C 0.17 3.69 7.26 -17.44 -0.13 3.57 15 16 Cl -0.03 -0.56 27.50 -51.86 -1.43 -1.99 15 17 N -0.49 -9.58 10.25 -6.62 -0.07 -9.65 15 18 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 19 H 0.07 0.65 8.07 -51.93 -0.42 0.23 15 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.13 1.54 8.06 -52.48 -0.42 1.11 15 22 H 0.14 2.28 8.06 -52.49 -0.42 1.85 15 23 H 0.04 1.14 7.37 -51.93 -0.38 0.76 15 24 H 0.03 0.83 8.03 -51.93 -0.42 0.41 15 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 LS Contribution 241.61 15.07 3.64 3.64 Total: -1.00 -29.74 241.61 -6.75 -36.49 By element: Atomic # 1 Polarization: -3.08 SS G_CDS: -2.45 Total: -5.53 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -2.16 Total: -14.27 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.67 Total: -34.79 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.43 Total: -1.99 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.74 -6.75 -36.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536169109.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.531 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds