Wall clock time and date at job start Mon Mar 30 2020 02:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48496 * 109.47185 * 270.00609 * 3 2 1 5 5 H 1.48501 * 109.47134 * 30.00545 * 3 2 1 6 6 H 1.48496 * 109.46989 * 150.00298 * 3 2 1 7 7 C 1.37880 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99488 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46701 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99845 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00492 * 359.97438 * 11 10 9 13 13 C 1.50709 * 119.99872 * 180.02562 * 11 10 9 14 14 H 1.08997 * 110.26749 * 320.62930 * 13 11 10 15 15 C 1.54640 * 110.38977 * 82.76717 * 13 11 10 16 16 C 1.54612 * 101.07060 * 142.97379 * 15 13 11 17 17 C 1.51266 * 103.94800 * 336.54477 * 16 15 13 18 18 N 1.36998 * 124.49264 * 195.90808 * 17 16 15 19 19 N 1.28714 * 111.00912 * 15.64600 * 17 16 15 20 20 H 0.97001 * 119.99691 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47453 * 60.00417 * 9 7 2 22 22 H 1.08997 * 109.46996 * 299.99700 * 9 7 2 23 23 H 0.97001 * 120.00176 * 0.02562 * 10 9 7 24 24 H 1.09005 * 111.11297 * 261.12592 * 15 13 11 25 25 H 1.08995 * 111.12010 * 25.26400 * 15 13 11 26 26 H 1.08993 * 110.61846 * 217.86896 * 16 15 13 27 27 H 1.09001 * 110.39595 * 95.11240 * 16 15 13 28 28 H 0.97001 * 120.00292 * 179.73081 * 18 17 16 29 29 H 0.97005 * 119.99983 * 359.45016 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0009 13 6 2.7332 -6.0288 0.0006 14 1 3.5794 -5.8024 -0.6481 15 6 3.2219 -6.3191 1.4387 16 6 3.3243 -7.8616 1.4118 17 6 2.3778 -8.2706 0.3050 18 7 1.9039 -9.5426 0.1200 19 7 2.0725 -7.2638 -0.4366 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5570 0.8897 23 1 3.1568 -3.4354 -0.0002 24 1 4.1939 -5.8614 1.6230 25 1 2.4894 -5.9911 2.1761 26 1 3.0045 -8.2841 2.3642 27 1 4.3430 -8.1706 1.1778 28 1 1.2950 -9.7318 -0.6110 29 1 2.1805 -10.2549 0.7175 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003599619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:16 Heat of formation + Delta-G solvation = -20.694510 kcal Electronic energy + Delta-G solvation = -13496.026400 eV Core-core repulsion = 11032.868567 eV Total energy + Delta-G solvation = -2463.157834 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.77603 -37.78152 -34.09264 -33.93725 -32.22500 -29.92056 -28.47254 -26.52786 -22.98903 -21.72031 -20.00467 -19.14228 -17.20413 -16.90152 -15.91575 -15.72190 -15.09128 -14.60985 -14.26702 -13.95583 -13.10892 -12.73044 -12.62220 -12.03796 -11.98269 -11.82180 -11.31484 -10.93996 -10.85575 -10.75528 -10.26829 -9.34600 -9.27131 -8.93829 -8.67802 -8.11180 -7.77097 -6.11837 -4.18540 2.64120 3.27114 3.32782 3.35286 3.41435 3.57675 4.17699 4.34728 4.42744 4.71231 4.97395 5.23894 5.29502 5.51830 5.63325 5.74897 5.78351 5.94119 6.10862 7.15828 7.39088 7.48651 7.55099 7.59669 7.74654 8.02998 8.28958 8.73280 8.86617 9.24573 9.48524 10.98452 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.077459 B = 0.005856 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.392820 B = 4780.114926 C = 5001.345924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.510 3.490 12 O -0.540 6.540 13 C 0.056 3.944 14 H 0.098 0.902 15 C -0.136 4.136 16 C -0.128 4.128 17 C 0.370 3.630 18 N -0.839 5.839 19 N -0.554 5.554 20 H 0.265 0.735 21 H 0.026 0.974 22 H 0.025 0.975 23 H 0.389 0.611 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.405 0.595 29 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.405 -15.509 3.249 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.293 3.707 12 O -0.417 6.417 13 C -0.059 4.059 14 H 0.115 0.885 15 C -0.175 4.175 16 C -0.169 4.169 17 C 0.086 3.914 18 N -0.388 5.388 19 N -0.279 5.279 20 H 0.075 0.925 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.221 0.779 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.235 0.765 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 7.870 -15.062 2.479 17.174 hybrid contribution 1.277 0.704 0.611 1.581 sum 9.147 -14.358 3.090 17.303 Atomic orbital electron populations 1.69988 1.06107 1.27215 1.49033 1.24965 0.94913 0.99431 0.94793 0.86414 0.79588 0.82689 0.78199 1.20479 1.21042 1.19769 1.21239 0.93254 0.90475 1.53001 0.91897 1.19076 0.88344 0.81936 0.97656 1.46425 1.10935 1.05961 1.73083 1.20101 0.89222 0.83731 0.77608 1.90640 1.16730 1.84690 1.49608 1.22403 0.95968 0.92135 0.95435 0.88473 1.22940 1.02922 0.94227 0.97421 1.22176 0.99576 0.96685 0.98470 1.21837 0.90483 0.87108 0.91927 1.41227 1.54189 1.06055 1.37345 1.73044 1.26835 0.97979 1.30058 0.92495 0.95597 0.95693 0.77899 0.89190 0.89953 0.89727 0.89137 0.76503 0.76649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.99 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 15 7 C -0.54 -15.07 9.28 -34.44 -0.32 -15.39 15 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 15 9 C 0.25 6.95 5.43 -5.19 -0.03 6.92 15 10 N -0.71 -15.99 5.55 -61.47 -0.34 -16.33 15 11 C 0.51 11.32 7.03 -10.98 -0.08 11.24 15 12 O -0.54 -14.59 16.59 5.56 0.09 -14.49 15 13 C 0.06 0.94 3.94 -68.09 -0.27 0.67 15 14 H 0.10 1.43 8.14 -51.93 -0.42 1.01 15 15 C -0.14 -1.73 6.75 -25.02 -0.17 -1.90 15 16 C -0.13 -1.28 6.88 -26.76 -0.18 -1.47 15 17 C 0.37 4.77 8.38 -154.78 -1.30 3.48 15 18 N -0.84 -7.54 8.99 32.88 0.30 -7.24 15 19 N -0.55 -9.67 10.70 -51.56 -0.55 -10.22 15 20 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.39 7.36 8.32 -40.82 -0.34 7.02 15 24 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.08 1.19 7.91 -51.93 -0.41 0.78 15 26 H 0.08 0.70 8.14 -51.93 -0.42 0.27 15 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 15 28 H 0.41 3.60 8.95 -40.82 -0.37 3.23 15 29 H 0.40 2.16 8.95 -40.82 -0.37 1.80 15 LS Contribution 258.00 15.07 3.89 3.89 Total: -1.00 -36.22 258.00 -6.89 -43.11 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.55 Total: 5.88 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -2.44 Total: 5.22 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.14 Total: -59.78 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.09 Total: -14.49 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -36.22 -6.89 -43.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003599619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.418 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds