Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48496 * 109.47185 * 270.00609 * 3 2 1 5 5 H 1.48501 * 109.47134 * 30.00545 * 3 2 1 6 6 H 1.48496 * 109.46989 * 150.00298 * 3 2 1 7 7 C 1.37880 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99971 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99488 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46701 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99845 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00492 * 359.97438 * 11 10 9 13 13 C 1.50709 * 119.99872 * 180.02562 * 11 10 9 14 14 H 1.08997 * 110.26749 * 320.62930 * 13 11 10 15 15 C 1.54640 * 110.38977 * 82.76717 * 13 11 10 16 16 C 1.54612 * 101.07060 * 142.97379 * 15 13 11 17 17 C 1.51266 * 103.94800 * 336.54477 * 16 15 13 18 18 N 1.36998 * 124.49264 * 195.90808 * 17 16 15 19 19 N 1.28714 * 111.00912 * 15.64600 * 17 16 15 20 20 H 0.97001 * 119.99691 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47453 * 60.00417 * 9 7 2 22 22 H 1.08997 * 109.46996 * 299.99700 * 9 7 2 23 23 H 0.97001 * 120.00176 * 0.02562 * 10 9 7 24 24 H 1.09005 * 111.11297 * 261.12592 * 15 13 11 25 25 H 1.08995 * 111.12010 * 25.26400 * 15 13 11 26 26 H 1.08993 * 110.61846 * 217.86896 * 16 15 13 27 27 H 1.09001 * 110.39595 * 95.11240 * 16 15 13 28 28 H 0.97001 * 120.00292 * 179.73081 * 18 17 16 29 29 H 0.97005 * 119.99983 * 359.45016 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0009 13 6 2.7332 -6.0288 0.0006 14 1 3.5794 -5.8024 -0.6481 15 6 3.2219 -6.3191 1.4387 16 6 3.3243 -7.8616 1.4118 17 6 2.3778 -8.2706 0.3050 18 7 1.9039 -9.5426 0.1200 19 7 2.0725 -7.2638 -0.4366 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5570 0.8897 23 1 3.1568 -3.4354 -0.0002 24 1 4.1939 -5.8614 1.6230 25 1 2.4894 -5.9911 2.1761 26 1 3.0045 -8.2841 2.3642 27 1 4.3430 -8.1706 1.1778 28 1 1.2950 -9.7318 -0.6110 29 1 2.1805 -10.2549 0.7175 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003599619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -51.995389 kcal Electronic energy + Delta-G solvation = -13497.383708 eV Core-core repulsion = 11032.868567 eV Total energy + Delta-G solvation = -2464.515142 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.12214 -39.30729 -36.12059 -34.97008 -34.29375 -30.92033 -30.12227 -28.20757 -24.86206 -23.09920 -21.49560 -20.45566 -18.94691 -17.87152 -17.67593 -16.98564 -16.72107 -16.12089 -15.78176 -15.73214 -14.59909 -14.20484 -14.04278 -13.83417 -13.62500 -12.93305 -12.86036 -12.76089 -12.62743 -12.22232 -11.67521 -11.49516 -10.80952 -10.74311 -10.24447 -9.83614 -9.19147 -8.29314 -6.46805 1.42735 1.46183 1.57126 1.61667 1.75567 2.33335 2.57098 2.81218 3.05080 3.36027 3.68145 3.93724 4.17418 4.40174 4.65319 4.80919 4.91859 4.97932 5.07197 5.13884 5.21347 5.48388 5.70243 5.83623 6.35871 6.62581 6.64227 6.94541 7.22820 7.44501 7.52557 8.83256 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.077459 B = 0.005856 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.392820 B = 4780.114926 C = 5001.345924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.267 3.733 10 N -0.706 5.706 11 C 0.503 3.497 12 O -0.598 6.598 13 C 0.065 3.935 14 H 0.117 0.883 15 C -0.133 4.133 16 C -0.117 4.117 17 C 0.377 3.623 18 N -0.821 5.821 19 N -0.627 5.627 20 H 0.269 0.731 21 H -0.019 1.019 22 H -0.015 1.015 23 H 0.409 0.591 24 H 0.124 0.876 25 H 0.057 0.943 26 H 0.109 0.891 27 H 0.127 0.873 28 H 0.406 0.594 29 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.547 -16.226 4.068 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.812 3.188 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.176 1.176 7 C -0.593 4.593 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.356 5.356 11 C 0.290 3.710 12 O -0.479 6.479 13 C -0.050 4.050 14 H 0.135 0.865 15 C -0.172 4.172 16 C -0.157 4.157 17 C 0.095 3.905 18 N -0.371 5.371 19 N -0.357 5.357 20 H 0.078 0.922 21 H -0.001 1.001 22 H 0.003 0.997 23 H 0.244 0.756 24 H 0.142 0.858 25 H 0.076 0.924 26 H 0.127 0.873 27 H 0.145 0.855 28 H 0.236 0.764 29 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 11.074 -15.866 3.322 19.632 hybrid contribution 0.225 0.773 0.354 0.879 sum 11.299 -15.093 3.676 19.209 Atomic orbital electron populations 1.70163 1.08435 1.28603 1.49988 1.26148 0.95811 1.04130 0.93771 0.85093 0.78513 0.76595 0.78612 1.19634 1.20904 1.17593 1.21620 0.94385 0.90352 1.52911 0.89523 1.18526 0.88771 0.84557 0.93732 1.46161 1.11117 1.05255 1.73093 1.21339 0.89677 0.84717 0.75294 1.90593 1.19764 1.85568 1.51958 1.22293 0.94288 0.89834 0.98624 0.86510 1.23012 1.03633 0.96741 0.93827 1.22221 1.00766 0.94294 0.98443 1.22338 0.89499 0.87271 0.91392 1.41325 1.52997 1.05442 1.37348 1.73014 1.30401 0.99153 1.33136 0.92240 1.00109 0.99682 0.75557 0.85805 0.92381 0.87263 0.85503 0.76448 0.74303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.06 13.29 21.45 0.28 -57.78 15 2 C 0.00 0.04 5.46 84.65 0.46 0.50 15 3 Si 0.99 43.11 29.54 68.60 2.03 45.14 15 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 6 H -0.25 -10.11 7.11 99.48 0.71 -9.40 15 7 C -0.55 -31.22 9.28 25.60 0.24 -30.99 15 8 H 0.09 4.36 7.60 -2.91 -0.02 4.33 15 9 C 0.27 15.59 5.43 85.63 0.46 16.05 15 10 N -0.71 -32.41 5.55 -466.78 -2.59 -35.00 15 11 C 0.50 23.08 7.03 87.66 0.62 23.70 15 12 O -0.60 -34.27 16.59 -3.03 -0.05 -34.32 15 13 C 0.06 2.12 3.94 44.76 0.18 2.30 15 14 H 0.12 3.23 8.14 -2.39 -0.02 3.21 15 15 C -0.13 -3.05 6.75 31.70 0.21 -2.84 15 16 C -0.12 -1.86 6.88 30.58 0.21 -1.65 15 17 C 0.38 8.88 8.38 138.18 1.16 10.03 15 18 N -0.82 -12.71 8.99 -49.90 -0.45 -13.16 15 19 N -0.63 -21.59 10.70 -317.03 -3.39 -24.98 15 20 H 0.27 15.54 8.31 -92.71 -0.77 14.77 15 21 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 15 22 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 15 23 H 0.41 15.24 8.32 -92.71 -0.77 14.46 15 24 H 0.12 1.98 8.14 -2.38 -0.02 1.96 15 25 H 0.06 1.62 7.91 -2.39 -0.02 1.60 15 26 H 0.11 1.28 8.14 -2.39 -0.02 1.26 15 27 H 0.13 1.22 8.14 -2.39 -0.02 1.20 15 28 H 0.41 6.55 8.95 -92.71 -0.83 5.72 15 29 H 0.42 3.08 8.95 -92.70 -0.83 2.25 15 Total: -1.00 -84.25 258.00 -1.87 -86.12 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -1.24 Total: 16.89 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 3.54 Total: 17.10 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -6.15 Total: -130.92 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.05 Total: -34.32 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -84.25 -1.87 -86.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003599619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.121 kcal (2) G-P(sol) polarization free energy of solvation -84.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds