Wall clock time and date at job start Mon Mar 30 2020 02:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48497 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47427 * 299.99592 * 3 2 1 6 6 H 1.48508 * 109.47302 * 59.99884 * 3 2 1 7 7 C 1.37877 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99753 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47003 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47211 * 180.02562 * 10 9 7 12 12 C 1.34143 * 118.70833 * 89.99506 * 11 10 9 13 13 O 1.21225 * 119.35859 * 359.48265 * 12 11 10 14 14 C 1.50588 * 121.28214 * 179.49678 * 12 11 10 15 15 C 1.53245 * 109.15898 * 29.07612 * 14 12 11 16 16 C 1.53244 * 108.72232 * 304.29124 * 15 14 12 17 17 C 1.34142 * 118.70413 * 270.01773 * 11 10 9 18 18 O 1.21224 * 119.35979 * 0.52049 * 17 11 10 19 19 H 0.97000 * 120.00522 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.47300 * 60.00164 * 9 7 2 21 21 H 1.08996 * 109.47470 * 299.99809 * 9 7 2 22 22 H 1.08994 * 109.47195 * 59.99810 * 10 9 7 23 23 H 1.09008 * 109.46951 * 299.99784 * 10 9 7 24 24 H 1.08995 * 109.52601 * 269.17006 * 14 12 11 25 25 H 1.09000 * 109.57518 * 149.01388 * 14 12 11 26 26 H 1.09002 * 109.62166 * 64.10935 * 15 14 12 27 27 H 1.08998 * 109.62170 * 184.47449 * 15 14 12 28 28 H 1.08993 * 109.52529 * 175.61203 * 16 15 14 29 29 H 1.09003 * 109.52089 * 295.80759 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5130 -4.9307 0.0012 12 6 1.1921 -5.4889 -1.1756 13 8 1.5055 -4.9290 -2.2041 14 6 0.4498 -6.7974 -1.2439 15 6 -0.4347 -6.9393 -0.0006 16 6 0.4443 -6.7999 1.2470 17 6 1.1893 -5.4883 1.1775 18 8 1.5001 -4.9279 2.2065 19 1 -0.4851 0.8400 -0.0004 20 1 0.6249 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 2.8714 -3.6039 0.8922 23 1 2.8728 -3.6047 -0.8878 24 1 1.1641 -7.6200 -1.2786 25 1 -0.1729 -6.8178 -2.1382 26 1 -1.1954 -6.1586 -0.0015 27 1 -0.9147 -7.9179 -0.0026 28 1 -0.1825 -6.8208 2.1384 29 1 1.1585 -7.6225 1.2831 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035328223.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:54 Heat of formation + Delta-G solvation = -84.841849 kcal Electronic energy + Delta-G solvation = -14093.157236 eV Core-core repulsion = 11594.925013 eV Total energy + Delta-G solvation = -2498.232222 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18058 -38.35484 -35.28082 -34.82052 -32.85547 -29.77903 -28.65609 -25.29008 -23.01963 -22.94447 -21.11273 -17.90439 -17.04453 -16.96907 -16.19431 -15.73581 -14.56539 -14.46963 -14.20900 -14.04231 -13.78282 -12.79163 -12.75585 -12.28723 -12.20993 -11.47756 -11.42832 -11.21989 -10.92247 -10.72107 -10.10447 -9.92666 -9.78834 -9.76106 -9.12363 -8.79174 -8.34069 -5.99056 -4.01736 1.90510 3.01627 3.22716 3.34309 3.40920 3.46037 4.18228 4.48401 4.55294 4.65233 4.71066 5.12540 5.28405 5.37667 5.54106 5.65224 5.70901 5.89016 6.09279 6.13665 6.44728 6.80692 7.37340 7.65319 7.77846 7.96404 7.98263 8.18599 8.39250 9.03559 9.61681 11.12987 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.046618 B = 0.008144 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.478857 B = 3437.448235 C = 3649.803291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.017 3.983 10 C 0.095 3.905 11 N -0.561 5.561 12 C 0.515 3.485 13 O -0.498 6.498 14 C -0.142 4.142 15 C -0.125 4.125 16 C -0.140 4.140 17 C 0.514 3.486 18 O -0.498 6.498 19 H 0.260 0.740 20 H 0.020 0.980 21 H 0.020 0.980 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 -16.130 -0.001 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.077 0.923 9 C -0.021 4.021 10 C -0.024 4.024 11 N -0.303 5.303 12 C 0.304 3.696 13 O -0.371 6.371 14 C -0.181 4.181 15 C -0.163 4.163 16 C -0.180 4.180 17 C 0.303 3.697 18 O -0.371 6.371 19 H 0.070 0.930 20 H 0.039 0.961 21 H 0.039 0.961 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.526 -15.423 0.000 15.432 hybrid contribution 0.352 0.968 -0.001 1.030 sum -0.175 -14.455 -0.001 14.456 Atomic orbital electron populations 1.69985 1.06138 1.26583 1.50650 1.24998 0.94873 0.99350 0.95099 0.86456 0.80092 0.83440 0.77545 1.19621 1.20958 1.20960 1.21073 0.93109 0.90468 1.50973 0.92322 1.19316 0.94201 0.90881 0.97667 1.22228 0.96497 0.80861 1.02814 1.46793 1.51894 1.24660 1.06948 1.20845 0.78784 0.86909 0.83093 1.90746 1.50660 1.62493 1.33182 1.21924 0.99981 0.95000 1.01233 1.21723 0.98156 1.04280 0.92091 1.21995 0.99944 0.94926 1.01160 1.20954 0.78763 0.86913 0.83088 1.90744 1.50727 1.62461 1.33144 0.92998 0.96144 0.96149 0.89981 0.89985 0.87729 0.87265 0.90172 0.89187 0.87257 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.92 13.29 55.43 0.74 -27.19 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 15 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 7 C -0.52 -15.39 9.11 -34.44 -0.31 -15.71 15 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 15 9 C 0.02 0.47 5.29 -27.88 -0.15 0.33 15 10 C 0.10 2.18 4.89 -4.04 -0.02 2.16 15 11 N -0.56 -10.55 2.53 -115.62 -0.29 -10.85 15 12 C 0.51 8.69 7.47 -11.32 -0.08 8.61 15 13 O -0.50 -10.45 16.45 5.61 0.09 -10.35 15 14 C -0.14 -1.45 6.07 -27.81 -0.17 -1.62 15 15 C -0.12 -1.09 6.07 -26.48 -0.16 -1.25 15 16 C -0.14 -1.43 6.11 -27.61 -0.17 -1.60 15 17 C 0.51 8.68 7.48 -11.12 -0.08 8.60 15 18 O -0.50 -10.45 16.45 5.61 0.09 -10.36 15 19 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 20 H 0.02 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.02 0.61 8.14 -51.93 -0.42 0.18 15 22 H 0.08 1.88 7.30 -51.93 -0.38 1.50 15 23 H 0.08 1.88 7.29 -51.92 -0.38 1.50 15 24 H 0.10 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.11 1.01 8.14 -51.93 -0.42 0.58 15 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 15 28 H 0.11 1.00 8.14 -51.93 -0.42 0.58 15 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 15 LS Contribution 253.29 15.07 3.82 3.82 Total: -1.00 -36.00 253.29 -5.50 -41.50 By element: Atomic # 1 Polarization: -1.47 SS G_CDS: -3.68 Total: -5.15 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.24 Total: 1.16 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.44 Total: -38.03 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.18 Total: -20.71 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -36.00 -5.50 -41.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035328223.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.339 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds