Wall clock time and date at job start Mon Mar 30 2020 02:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48497 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47427 * 299.99592 * 3 2 1 6 6 H 1.48508 * 109.47302 * 59.99884 * 3 2 1 7 7 C 1.37877 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99753 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47003 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47211 * 180.02562 * 10 9 7 12 12 C 1.34143 * 118.70833 * 89.99506 * 11 10 9 13 13 O 1.21225 * 119.35859 * 359.48265 * 12 11 10 14 14 C 1.50588 * 121.28214 * 179.49678 * 12 11 10 15 15 C 1.53245 * 109.15898 * 29.07612 * 14 12 11 16 16 C 1.53244 * 108.72232 * 304.29124 * 15 14 12 17 17 C 1.34142 * 118.70413 * 270.01773 * 11 10 9 18 18 O 1.21224 * 119.35979 * 0.52049 * 17 11 10 19 19 H 0.97000 * 120.00522 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.47300 * 60.00164 * 9 7 2 21 21 H 1.08996 * 109.47470 * 299.99809 * 9 7 2 22 22 H 1.08994 * 109.47195 * 59.99810 * 10 9 7 23 23 H 1.09008 * 109.46951 * 299.99784 * 10 9 7 24 24 H 1.08995 * 109.52601 * 269.17006 * 14 12 11 25 25 H 1.09000 * 109.57518 * 149.01388 * 14 12 11 26 26 H 1.09002 * 109.62166 * 64.10935 * 15 14 12 27 27 H 1.08998 * 109.62170 * 184.47449 * 15 14 12 28 28 H 1.08993 * 109.52529 * 175.61203 * 16 15 14 29 29 H 1.09003 * 109.52089 * 295.80759 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5130 -4.9307 0.0012 12 6 1.1921 -5.4889 -1.1756 13 8 1.5055 -4.9290 -2.2041 14 6 0.4498 -6.7974 -1.2439 15 6 -0.4347 -6.9393 -0.0006 16 6 0.4443 -6.7999 1.2470 17 6 1.1893 -5.4883 1.1775 18 8 1.5001 -4.9279 2.2065 19 1 -0.4851 0.8400 -0.0004 20 1 0.6249 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 2.8714 -3.6039 0.8922 23 1 2.8728 -3.6047 -0.8878 24 1 1.1641 -7.6200 -1.2786 25 1 -0.1729 -6.8178 -2.1382 26 1 -1.1954 -6.1586 -0.0015 27 1 -0.9147 -7.9179 -0.0026 28 1 -0.1825 -6.8208 2.1384 29 1 1.1585 -7.6225 1.2831 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035328223.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:54 Heat of formation + Delta-G solvation = -111.174868 kcal Electronic energy + Delta-G solvation = -14094.299121 eV Core-core repulsion = 11594.925013 eV Total energy + Delta-G solvation = -2499.374108 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.55134 -39.80315 -36.58698 -36.35615 -34.88593 -31.79446 -29.62504 -27.27282 -24.41243 -24.27938 -22.90221 -19.13356 -18.88653 -18.36977 -17.77118 -17.34097 -16.53091 -15.66481 -15.50979 -15.34703 -14.95890 -14.87577 -14.35739 -13.86026 -13.41418 -13.23279 -12.92625 -12.73487 -12.27901 -12.11493 -11.99181 -11.91956 -11.56398 -11.18335 -10.96299 -10.67158 -10.56922 -8.30193 -6.43645 0.58634 1.35098 1.37478 1.50912 1.66895 1.93033 2.36094 3.03278 3.11890 3.68340 3.79311 3.95505 4.21553 4.35492 4.45667 4.46966 4.63051 4.72735 4.85296 4.91976 5.05628 5.22373 5.30122 5.37314 5.67010 6.05093 6.08717 6.64405 6.68485 6.84159 7.26025 8.83224 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.046618 B = 0.008144 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.478857 B = 3437.448235 C = 3649.803291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.109 3.891 11 N -0.573 5.573 12 C 0.506 3.494 13 O -0.551 6.551 14 C -0.128 4.128 15 C -0.117 4.117 16 C -0.126 4.126 17 C 0.505 3.495 18 O -0.551 6.551 19 H 0.267 0.733 20 H -0.014 1.014 21 H -0.014 1.014 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.147 0.853 25 H 0.124 0.876 26 H 0.059 0.941 27 H 0.145 0.855 28 H 0.125 0.875 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 -18.044 0.000 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.083 0.917 9 C -0.005 4.005 10 C -0.013 4.013 11 N -0.314 5.314 12 C 0.299 3.701 13 O -0.427 6.427 14 C -0.167 4.167 15 C -0.154 4.154 16 C -0.165 4.165 17 C 0.298 3.702 18 O -0.427 6.427 19 H 0.075 0.925 20 H 0.005 0.995 21 H 0.005 0.995 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.165 0.835 25 H 0.142 0.858 26 H 0.078 0.922 27 H 0.163 0.837 28 H 0.143 0.857 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.547 -17.390 0.001 17.398 hybrid contribution 0.318 1.539 -0.001 1.571 sum -0.229 -15.851 -0.001 15.853 Atomic orbital electron populations 1.70118 1.08066 1.28107 1.51012 1.26083 0.95901 1.03809 0.94028 0.85225 0.78970 0.77728 0.78057 1.18337 1.19901 1.19912 1.21521 0.93716 0.91729 1.51702 0.91682 1.19048 0.94230 0.93074 0.94196 1.21635 0.95462 0.81988 1.02199 1.46995 1.52006 1.23343 1.09057 1.22358 0.77737 0.88623 0.81360 1.90718 1.52855 1.64446 1.34644 1.22096 1.00430 0.91335 1.02815 1.21801 0.97011 1.06557 0.90063 1.22168 1.00378 0.91223 1.02745 1.22480 0.77718 0.88645 0.81354 1.90716 1.52916 1.64422 1.34610 0.92464 0.99536 0.99545 0.90481 0.90481 0.83485 0.85752 0.92212 0.83733 0.85730 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.02 13.29 21.45 0.28 -59.74 15 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 15 3 Si 0.98 46.59 29.54 68.60 2.03 48.62 15 4 H -0.26 -11.77 7.11 99.48 0.71 -11.07 15 5 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 7 C -0.55 -33.92 9.11 25.60 0.23 -33.68 15 8 H 0.06 3.83 7.74 -2.91 -0.02 3.81 15 9 C 0.03 1.92 5.29 29.85 0.16 2.07 15 10 C 0.11 5.27 4.89 86.38 0.42 5.69 15 11 N -0.57 -22.02 2.53 -757.25 -1.91 -23.93 15 12 C 0.51 16.96 7.47 87.72 0.66 17.61 15 13 O -0.55 -23.76 16.45 -2.86 -0.05 -23.80 15 14 C -0.13 -2.13 6.07 29.89 0.18 -1.95 15 15 C -0.12 -1.50 6.07 30.76 0.19 -1.32 15 16 C -0.13 -2.10 6.11 30.02 0.18 -1.91 15 17 C 0.51 16.92 7.48 87.85 0.66 17.58 15 18 O -0.55 -23.77 16.45 -2.86 -0.05 -23.81 15 19 H 0.27 15.86 8.31 -92.71 -0.77 15.09 15 20 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 15 21 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 15 22 H 0.08 3.74 7.30 -2.39 -0.02 3.72 15 23 H 0.08 3.74 7.29 -2.38 -0.02 3.72 15 24 H 0.15 1.33 8.14 -2.39 -0.02 1.32 15 25 H 0.12 1.81 8.14 -2.39 -0.02 1.79 15 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 15 27 H 0.14 0.50 8.14 -2.39 -0.02 0.48 15 28 H 0.12 1.80 8.14 -2.39 -0.02 1.78 15 29 H 0.15 1.33 8.14 -2.39 -0.02 1.31 15 Total: -1.00 -85.27 253.29 4.58 -80.69 By element: Atomic # 1 Polarization: -3.70 SS G_CDS: 1.14 Total: -2.56 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 3.14 Total: 4.54 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.63 Total: -83.67 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -0.09 Total: -47.62 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -85.27 4.58 -80.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035328223.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.488 kcal (2) G-P(sol) polarization free energy of solvation -85.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds