Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34145 * 118.70704 * 299.73584 * 12 2 1 14 14 O 1.21228 * 119.35435 * 359.45325 * 13 12 2 15 15 C 1.50594 * 121.27802 * 179.19973 * 13 12 2 16 16 C 1.53235 * 109.05165 * 29.57120 * 15 13 12 17 17 C 1.53244 * 108.56716 * 304.17583 * 16 15 13 18 18 C 1.34146 * 118.70943 * 119.99929 * 12 2 1 19 19 O 1.21221 * 119.35561 * 0.54298 * 18 12 2 20 20 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.74611 * 269.59419 * 15 13 12 25 25 H 1.09000 * 109.45667 * 149.37219 * 15 13 12 26 26 H 1.09005 * 109.62148 * 184.45372 * 16 15 13 27 27 H 1.08997 * 109.77662 * 63.99144 * 16 15 13 28 28 H 1.08991 * 109.52439 * 295.70871 * 17 16 15 29 29 H 1.09008 * 109.52151 * 175.52015 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6829 -1.9762 -1.3801 14 8 0.9963 -2.5355 -0.5522 15 6 2.1380 -2.7366 -2.5977 16 6 3.4793 -2.1664 -3.0710 17 6 3.3114 -0.6630 -3.3156 18 6 2.7877 -0.0137 -2.0619 19 8 3.0671 1.1429 -1.8303 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 0.7089 1.1611 3.4845 24 1 1.3987 -2.6360 -3.3923 25 1 2.2590 -3.7897 -2.3439 26 1 3.7790 -2.6567 -3.9973 27 1 4.2397 -2.3304 -2.3075 28 1 2.6057 -0.5031 -4.1307 29 1 4.2756 -0.2265 -3.5765 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247009.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = -73.685921 kcal Electronic energy + Delta-G solvation = -14627.585068 eV Core-core repulsion = 12129.836603 eV Total energy + Delta-G solvation = -2497.748465 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82235 -37.95079 -35.09078 -34.62694 -32.43787 -29.14870 -28.38315 -25.17818 -23.46187 -22.50094 -20.88339 -17.81471 -16.89917 -16.50020 -15.61761 -15.41136 -14.53272 -14.16527 -14.01077 -13.68406 -13.39041 -12.53530 -12.41081 -11.94261 -11.59875 -11.25927 -11.17548 -11.02247 -10.76436 -10.74564 -10.41389 -10.07906 -9.48343 -9.35851 -8.92655 -8.35751 -8.28445 -6.00649 -4.04888 2.29043 3.35522 3.38540 3.40802 3.53554 3.63476 4.45736 4.52592 4.76743 4.91917 4.94014 5.32171 5.36349 5.51438 5.70866 5.84743 5.97576 6.08481 6.58533 6.82475 7.05887 7.06677 7.49278 7.71250 7.98651 8.06364 8.26938 8.51170 8.68833 8.93306 9.57610 11.06183 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.037873 B = 0.011465 C = 0.010670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.126445 B = 2441.560038 C = 2623.644078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.245 3.755 3 H 0.070 0.930 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.550 5.550 13 C 0.510 3.490 14 O -0.477 6.477 15 C -0.145 4.145 16 C -0.121 4.121 17 C -0.143 4.143 18 C 0.512 3.488 19 O -0.513 6.513 20 H 0.052 0.948 21 H 0.096 0.904 22 H 0.005 0.995 23 H 0.263 0.737 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.314 -5.677 -11.724 13.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.147 3.853 3 H 0.088 0.912 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.730 3.270 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.291 5.291 13 C 0.298 3.702 14 O -0.348 6.348 15 C -0.186 4.186 16 C -0.159 4.159 17 C -0.183 4.183 18 C 0.301 3.699 19 O -0.388 6.388 20 H 0.071 0.929 21 H 0.114 0.886 22 H 0.024 0.976 23 H 0.073 0.927 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.997 -5.251 -10.999 12.552 hybrid contribution 0.292 -0.450 0.803 0.966 sum 3.289 -5.701 -10.196 12.136 Atomic orbital electron populations 1.22141 0.97223 1.01235 1.00544 1.19277 0.92075 0.94399 0.79574 0.91247 1.21047 1.31470 1.12146 0.89861 0.92527 1.24830 0.95103 0.95025 0.98904 1.69865 1.36691 1.22807 1.23789 0.86490 0.78985 0.79792 0.81761 1.21153 1.20134 1.20346 1.46949 1.45247 1.12437 1.24491 1.20574 0.80284 0.81775 0.87609 1.90715 1.34047 1.66840 1.43183 1.21964 0.98448 1.01354 0.96789 1.21679 0.97269 0.94169 1.02784 1.21920 1.03916 0.96344 0.96145 1.20744 0.77622 0.86810 0.84703 1.90684 1.55582 1.17305 1.75219 0.92948 0.88595 0.97552 0.92702 0.88220 0.87851 0.89719 0.90524 0.88071 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.88 37.16 0.33 -3.67 15 2 C 0.25 6.60 2.49 -69.09 -0.17 6.43 15 3 H 0.07 2.07 6.73 -51.93 -0.35 1.72 15 4 C -0.51 -14.69 7.46 -34.44 -0.26 -14.95 15 5 H 0.06 1.66 7.39 -52.49 -0.39 1.27 15 6 C 0.06 1.82 5.30 -17.82 -0.09 1.72 15 7 N -0.89 -26.36 11.32 55.43 0.63 -25.74 15 8 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 15 9 H -0.29 -6.94 7.11 56.52 0.40 -6.53 15 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 12 N -0.55 -12.15 2.49 -109.92 -0.27 -12.42 15 13 C 0.51 10.13 6.73 -11.32 -0.08 10.05 15 14 O -0.48 -11.41 13.80 5.60 0.08 -11.33 15 15 C -0.15 -1.84 6.08 -27.81 -0.17 -2.01 15 16 C -0.12 -1.28 6.08 -26.48 -0.16 -1.44 15 17 C -0.14 -1.77 6.07 -27.81 -0.17 -1.94 15 18 C 0.51 9.99 7.48 -11.32 -0.08 9.90 15 19 O -0.51 -11.99 16.19 5.61 0.09 -11.90 15 20 H 0.05 1.38 6.07 -51.93 -0.32 1.06 15 21 H 0.10 2.70 6.07 -51.93 -0.32 2.38 15 22 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 15 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 24 H 0.10 1.02 8.14 -51.93 -0.42 0.59 15 25 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 15 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.10 1.00 8.14 -51.93 -0.42 0.58 15 29 H 0.10 1.13 8.14 -51.92 -0.42 0.71 15 LS Contribution 242.78 15.07 3.66 3.66 Total: -1.00 -34.01 242.78 -5.15 -39.17 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -3.46 Total: -2.93 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.85 Total: 4.11 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.35 Total: -38.16 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.17 Total: -23.23 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -34.01 -5.15 -39.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247009.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.518 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds