Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34145 * 118.70704 * 299.73584 * 12 2 1 14 14 O 1.21228 * 119.35435 * 359.45325 * 13 12 2 15 15 C 1.50594 * 121.27802 * 179.19973 * 13 12 2 16 16 C 1.53235 * 109.05165 * 29.57120 * 15 13 12 17 17 C 1.53244 * 108.56716 * 304.17583 * 16 15 13 18 18 C 1.34146 * 118.70943 * 119.99929 * 12 2 1 19 19 O 1.21221 * 119.35561 * 0.54298 * 18 12 2 20 20 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.74611 * 269.59419 * 15 13 12 25 25 H 1.09000 * 109.45667 * 149.37219 * 15 13 12 26 26 H 1.09005 * 109.62148 * 184.45372 * 16 15 13 27 27 H 1.08997 * 109.77662 * 63.99144 * 16 15 13 28 28 H 1.08991 * 109.52439 * 295.70871 * 17 16 15 29 29 H 1.09008 * 109.52151 * 175.52015 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6829 -1.9762 -1.3801 14 8 0.9963 -2.5355 -0.5522 15 6 2.1380 -2.7366 -2.5977 16 6 3.4793 -2.1664 -3.0710 17 6 3.3114 -0.6630 -3.3156 18 6 2.7877 -0.0137 -2.0619 19 8 3.0671 1.1429 -1.8303 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 0.7089 1.1611 3.4845 24 1 1.3987 -2.6360 -3.3923 25 1 2.2590 -3.7897 -2.3439 26 1 3.7790 -2.6567 -3.9973 27 1 4.2397 -2.3304 -2.3075 28 1 2.6057 -0.5031 -4.1307 29 1 4.2756 -0.2265 -3.5765 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247009.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = -98.279286 kcal Electronic energy + Delta-G solvation = -14628.651517 eV Core-core repulsion = 12129.836603 eV Total energy + Delta-G solvation = -2498.814913 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.38161 -39.58535 -36.60013 -36.29274 -34.36018 -31.12788 -29.52270 -27.40989 -24.87971 -24.00327 -22.59199 -19.31173 -18.64043 -18.17261 -17.44366 -16.94637 -16.40873 -15.51814 -15.43402 -15.18108 -14.79589 -14.57967 -13.79330 -13.53105 -13.22840 -13.15442 -12.90632 -12.78458 -12.37447 -12.24282 -12.11558 -11.86976 -11.45890 -10.94997 -10.77991 -10.39954 -10.24449 -8.21587 -6.34094 0.78282 1.33655 1.37936 1.45141 1.99269 2.16082 2.38818 3.06742 3.29498 3.82064 3.86432 4.02833 4.46866 4.61412 4.66945 4.71931 4.88672 4.90802 4.92269 5.00149 5.11139 5.26111 5.38336 5.58454 5.80696 6.01283 6.42180 6.64271 6.95973 7.10488 7.34236 8.84585 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.037873 B = 0.011465 C = 0.010670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.126445 B = 2441.560038 C = 2623.644078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.246 3.754 3 H 0.028 0.972 4 C -0.523 4.523 5 H 0.045 0.955 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.270 1.270 12 N -0.565 5.565 13 C 0.500 3.500 14 O -0.530 6.530 15 C -0.131 4.131 16 C -0.112 4.112 17 C -0.128 4.128 18 C 0.501 3.499 19 O -0.565 6.565 20 H 0.046 0.954 21 H 0.070 0.930 22 H 0.022 0.978 23 H 0.266 0.734 24 H 0.137 0.863 25 H 0.122 0.878 26 H 0.141 0.859 27 H 0.063 0.937 28 H 0.139 0.861 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -7.522 -13.821 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.145 3.855 3 H 0.046 0.954 4 C -0.561 4.561 5 H 0.064 0.936 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.195 1.195 12 N -0.306 5.306 13 C 0.291 3.709 14 O -0.405 6.405 15 C -0.170 4.170 16 C -0.149 4.149 17 C -0.167 4.167 18 C 0.294 3.706 19 O -0.443 6.443 20 H 0.065 0.935 21 H 0.089 0.911 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.155 0.845 25 H 0.140 0.860 26 H 0.160 0.840 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.098 -7.115 -13.142 15.496 hybrid contribution -0.057 0.165 1.421 1.432 sum 4.041 -6.950 -11.721 14.213 Atomic orbital electron populations 1.21910 0.97059 1.00520 1.00056 1.18783 0.92199 0.92807 0.81708 0.95364 1.21243 1.31705 1.11911 0.91290 0.93635 1.25714 0.95286 0.95795 1.01994 1.69990 1.37346 1.23859 1.24569 0.85490 0.78744 0.78508 0.78187 1.19920 1.19987 1.19470 1.47073 1.46093 1.13726 1.23668 1.22098 0.78793 0.80728 0.89247 1.90682 1.36536 1.67521 1.45739 1.22079 1.00415 1.00854 0.93645 1.21757 0.95460 0.92731 1.04975 1.22061 1.05293 0.97021 0.92340 1.22305 0.75944 0.86310 0.86011 1.90657 1.57186 1.19827 1.76641 0.93540 0.91121 0.95918 0.92479 0.84519 0.86027 0.84050 0.91797 0.84341 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.45 8.88 71.98 0.64 -6.81 15 2 C 0.25 13.84 2.49 44.24 0.11 13.95 15 3 H 0.03 1.80 6.73 -2.39 -0.02 1.79 15 4 C -0.52 -31.44 7.46 25.60 0.19 -31.25 15 5 H 0.05 2.76 7.39 -2.91 -0.02 2.73 15 6 C 0.01 0.66 5.30 84.66 0.45 1.10 15 7 N -0.92 -56.09 11.32 21.45 0.24 -55.85 15 8 Si 0.97 46.74 29.54 68.60 2.03 48.77 15 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 15 10 H -0.27 -13.14 7.11 99.48 0.71 -12.43 15 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 12 N -0.57 -25.18 2.49 -739.22 -1.84 -27.01 15 13 C 0.50 19.41 6.73 87.72 0.59 20.00 15 14 O -0.53 -25.67 13.80 -2.87 -0.04 -25.71 15 15 C -0.13 -2.73 6.08 29.89 0.18 -2.55 15 16 C -0.11 -1.75 6.08 30.75 0.19 -1.56 15 17 C -0.13 -2.60 6.07 29.89 0.18 -2.42 15 18 C 0.50 19.25 7.48 87.72 0.66 19.91 15 19 O -0.57 -27.10 16.19 -2.85 -0.05 -27.14 15 20 H 0.05 2.53 6.07 -2.39 -0.01 2.52 15 21 H 0.07 4.16 6.07 -2.39 -0.01 4.15 15 22 H 0.02 1.09 8.14 -2.38 -0.02 1.07 15 23 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 24 H 0.14 1.96 8.14 -2.39 -0.02 1.94 15 25 H 0.12 2.20 8.14 -2.39 -0.02 2.18 15 26 H 0.14 0.84 8.14 -2.38 -0.02 0.82 15 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 15 28 H 0.14 1.91 8.14 -2.39 -0.02 1.89 15 29 H 0.12 2.13 8.14 -2.38 -0.02 2.11 15 Total: -1.00 -80.62 242.78 4.68 -75.94 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: 1.15 Total: 0.64 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 3.19 Total: 10.36 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -1.59 Total: -82.86 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.09 Total: -52.85 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -80.62 4.68 -75.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247009.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.342 kcal (2) G-P(sol) polarization free energy of solvation -80.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds