Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46506 * 109.46817 * 119.99917 * 2 1 3 13 13 C 1.34144 * 118.70493 * 59.72989 * 12 2 1 14 14 O 1.21216 * 119.36381 * 359.45783 * 13 12 2 15 15 C 1.50601 * 121.27291 * 179.20013 * 13 12 2 16 16 C 1.53243 * 109.06808 * 29.53611 * 15 13 12 17 17 C 1.53240 * 108.57441 * 304.21169 * 16 15 13 18 18 C 1.34146 * 118.70421 * 240.00175 * 12 2 1 19 19 O 1.21224 * 119.35898 * 0.54080 * 18 12 2 20 20 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 21 21 H 1.08998 * 109.46841 * 60.00163 * 1 2 3 22 22 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 23 23 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 24 24 H 1.08996 * 109.70807 * 269.57912 * 15 13 12 25 25 H 1.08990 * 109.47649 * 149.36326 * 15 13 12 26 26 H 1.08999 * 109.61843 * 184.48318 * 16 15 13 27 27 H 1.09006 * 109.77306 * 64.02817 * 16 15 13 28 28 H 1.09000 * 109.51754 * 295.71147 * 17 16 15 29 29 H 1.08994 * 109.57478 * 175.55059 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0183 -0.6906 1.1963 13 6 1.6738 -1.9732 1.3854 14 8 0.9631 -2.5239 0.5725 15 6 2.1577 -2.7438 2.5855 16 6 2.3670 -1.7732 3.7527 17 6 3.3313 -0.6702 3.3035 18 6 2.7876 -0.0138 2.0620 19 8 3.0507 1.1486 1.8404 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.9041 -0.5278 -4.4374 24 1 3.1001 -3.2380 2.3494 25 1 1.4138 -3.4909 2.8618 26 1 2.7926 -2.3081 4.6017 27 1 1.4130 -1.3307 4.0399 28 1 4.3072 -1.1053 3.0880 29 1 3.4304 0.0728 4.0948 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = -64.348773 kcal Electronic energy + Delta-G solvation = -14670.883995 eV Core-core repulsion = 12173.540420 eV Total energy + Delta-G solvation = -2497.343576 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.98262 -38.07837 -35.23275 -34.79506 -32.40944 -30.11045 -28.46278 -25.13367 -23.63084 -22.65079 -21.05200 -17.69849 -17.20516 -16.59251 -16.01948 -15.68359 -14.49339 -14.24103 -14.11191 -13.80399 -13.52747 -12.83229 -12.53544 -12.21706 -12.02531 -11.86884 -11.42323 -11.25120 -11.06108 -10.69563 -10.21063 -9.73730 -9.58386 -9.47787 -8.99353 -8.60650 -8.46967 -6.07481 -4.06462 2.18827 3.28488 3.32227 3.39318 3.40908 3.52833 4.39621 4.41354 4.69069 4.81411 4.85674 5.24506 5.29554 5.50579 5.64046 5.77310 5.87251 6.00793 6.15255 6.31655 6.45973 6.65938 6.89837 7.17093 7.54393 7.85930 8.29931 8.39802 8.62547 8.92053 9.50700 11.05789 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.041730 B = 0.012092 C = 0.010930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.823961 B = 2315.092541 C = 2561.168748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.217 3.783 3 H 0.069 0.931 4 C -0.511 4.511 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.265 1.265 11 H -0.293 1.293 12 N -0.545 5.545 13 C 0.511 3.489 14 O -0.471 6.471 15 C -0.145 4.145 16 C -0.121 4.121 17 C -0.143 4.143 18 C 0.515 3.485 19 O -0.515 6.515 20 H 0.028 0.972 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.265 0.735 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -1.745 14.980 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.116 3.884 3 H 0.087 0.913 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.190 1.190 11 H -0.221 1.221 12 N -0.286 5.286 13 C 0.299 3.701 14 O -0.342 6.342 15 C -0.185 4.185 16 C -0.159 4.159 17 C -0.183 4.183 18 C 0.304 3.696 19 O -0.390 6.390 20 H 0.047 0.953 21 H 0.070 0.930 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.123 0.877 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.036 -1.448 14.216 14.290 hybrid contribution -0.530 0.714 -0.306 0.940 sum -0.566 -0.734 13.910 13.941 Atomic orbital electron populations 1.22522 0.98123 1.02911 0.98972 1.19609 0.91193 0.95110 0.82466 0.91329 1.20910 1.32413 1.13550 0.88098 0.90518 1.24800 0.95682 0.96699 0.95521 1.69866 1.45410 1.40134 0.97871 0.86924 0.80746 0.83658 0.77368 1.20299 1.18952 1.22066 1.46609 1.45559 1.12782 1.23616 1.20611 0.80607 0.81513 0.87375 1.90731 1.33146 1.66700 1.43591 1.21964 1.04545 0.98897 0.93054 1.21690 1.00173 0.95956 0.98054 1.21919 1.00889 0.99658 0.95790 1.20781 0.77448 0.86827 0.84496 1.90680 1.55774 1.16940 1.75584 0.95322 0.92985 0.90424 0.92477 0.87813 0.87716 0.89510 0.90723 0.87673 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 8.57 37.16 0.32 -3.65 15 2 C 0.22 5.51 2.08 -69.08 -0.14 5.37 15 3 H 0.07 1.85 5.79 -51.93 -0.30 1.55 15 4 C -0.51 -15.09 8.07 -34.44 -0.28 -15.36 15 5 H 0.08 2.47 7.69 -52.49 -0.40 2.07 15 6 C 0.08 2.26 5.45 -17.82 -0.10 2.16 15 7 N -0.89 -28.19 13.96 55.43 0.77 -27.41 15 8 Si 0.88 22.72 24.37 -169.99 -4.14 18.58 15 9 H -0.28 -6.89 6.87 56.52 0.39 -6.50 15 10 H -0.26 -6.60 6.53 56.52 0.37 -6.23 15 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 15 12 N -0.54 -11.53 2.49 -109.92 -0.27 -11.80 15 13 C 0.51 9.85 6.73 -11.32 -0.08 9.77 15 14 O -0.47 -11.09 13.81 5.61 0.08 -11.01 15 15 C -0.14 -1.76 6.08 -27.81 -0.17 -1.92 15 16 C -0.12 -1.14 6.08 -26.48 -0.16 -1.30 15 17 C -0.14 -1.65 6.07 -27.81 -0.17 -1.82 15 18 C 0.52 9.54 7.48 -11.32 -0.08 9.46 15 19 O -0.52 -11.39 16.19 5.61 0.09 -11.30 15 20 H 0.03 0.59 8.14 -51.93 -0.42 0.16 15 21 H 0.05 1.26 3.27 -51.93 -0.17 1.09 15 22 H 0.08 1.89 5.99 -51.93 -0.31 1.58 15 23 H 0.27 7.80 8.31 -40.82 -0.34 7.46 15 24 H 0.10 1.11 8.14 -51.93 -0.42 0.68 15 25 H 0.10 1.10 8.14 -51.93 -0.42 0.67 15 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 15 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 28 H 0.11 1.04 8.14 -51.93 -0.42 0.62 15 29 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 LS Contribution 235.98 15.07 3.56 3.56 Total: -1.00 -35.49 235.98 -4.10 -39.60 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -3.33 Total: -2.90 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.86 Total: 2.69 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.50 Total: -39.21 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.17 Total: -22.31 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.14 Total: 18.58 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -35.49 -4.10 -39.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.754 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds