Wall clock time and date at job start Mon Mar 30 2020 02:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46506 * 109.46817 * 119.99917 * 2 1 3 13 13 C 1.34144 * 118.70493 * 59.72989 * 12 2 1 14 14 O 1.21216 * 119.36381 * 359.45783 * 13 12 2 15 15 C 1.50601 * 121.27291 * 179.20013 * 13 12 2 16 16 C 1.53243 * 109.06808 * 29.53611 * 15 13 12 17 17 C 1.53240 * 108.57441 * 304.21169 * 16 15 13 18 18 C 1.34146 * 118.70421 * 240.00175 * 12 2 1 19 19 O 1.21224 * 119.35898 * 0.54080 * 18 12 2 20 20 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 21 21 H 1.08998 * 109.46841 * 60.00163 * 1 2 3 22 22 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 23 23 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 24 24 H 1.08996 * 109.70807 * 269.57912 * 15 13 12 25 25 H 1.08990 * 109.47649 * 149.36326 * 15 13 12 26 26 H 1.08999 * 109.61843 * 184.48318 * 16 15 13 27 27 H 1.09006 * 109.77306 * 64.02817 * 16 15 13 28 28 H 1.09000 * 109.51754 * 295.71147 * 17 16 15 29 29 H 1.08994 * 109.57478 * 175.55059 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0183 -0.6906 1.1963 13 6 1.6738 -1.9732 1.3854 14 8 0.9631 -2.5239 0.5725 15 6 2.1577 -2.7438 2.5855 16 6 2.3670 -1.7732 3.7527 17 6 3.3313 -0.6702 3.3035 18 6 2.7876 -0.0138 2.0620 19 8 3.0507 1.1486 1.8404 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.9041 -0.5278 -4.4374 24 1 3.1001 -3.2380 2.3494 25 1 1.4138 -3.4909 2.8618 26 1 2.7926 -2.3081 4.6017 27 1 1.4130 -1.3307 4.0399 28 1 4.3072 -1.1053 3.0880 29 1 3.4304 0.0728 4.0948 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:25 Heat of formation + Delta-G solvation = -91.856583 kcal Electronic energy + Delta-G solvation = -14672.076824 eV Core-core repulsion = 12173.540420 eV Total energy + Delta-G solvation = -2498.536404 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.48095 -39.64810 -36.72080 -36.33351 -34.43590 -31.96868 -29.55282 -27.31105 -24.98488 -24.09626 -22.66597 -19.14876 -19.00837 -18.28499 -17.69275 -17.28498 -16.22386 -15.53825 -15.51497 -15.24795 -14.90218 -14.86847 -14.23581 -13.90003 -13.66340 -13.23903 -13.17087 -12.72426 -12.30835 -12.09493 -11.92665 -11.69858 -11.56814 -11.00848 -10.87030 -10.62358 -10.35329 -8.39656 -6.43363 0.74186 1.21610 1.27950 1.37747 1.86920 2.10988 2.22044 2.93633 3.24447 3.78293 3.85325 4.00560 4.30434 4.37780 4.47030 4.50565 4.66264 4.73495 4.89077 4.92444 4.95234 5.12777 5.24768 5.30735 5.40296 6.06787 6.32944 6.53338 6.84608 7.03997 7.20342 8.77631 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.041730 B = 0.012092 C = 0.010930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.823961 B = 2315.092541 C = 2561.168748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.052 0.948 4 C -0.513 4.513 5 H 0.031 0.969 6 C 0.015 3.985 7 N -0.942 5.942 8 Si 0.947 3.053 9 H -0.261 1.261 10 H -0.253 1.253 11 H -0.287 1.287 12 N -0.560 5.560 13 C 0.501 3.499 14 O -0.528 6.528 15 C -0.132 4.132 16 C -0.109 4.109 17 C -0.130 4.130 18 C 0.506 3.494 19 O -0.560 6.560 20 H 0.058 0.942 21 H 0.045 0.955 22 H 0.066 0.934 23 H 0.269 0.731 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.139 0.861 27 H 0.077 0.923 28 H 0.129 0.871 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 -1.608 18.035 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.113 3.887 3 H 0.070 0.930 4 C -0.552 4.552 5 H 0.050 0.950 6 C -0.182 4.182 7 N -0.582 5.582 8 Si 0.773 3.227 9 H -0.186 1.186 10 H -0.178 1.178 11 H -0.214 1.214 12 N -0.300 5.300 13 C 0.293 3.707 14 O -0.403 6.403 15 C -0.172 4.172 16 C -0.146 4.146 17 C -0.169 4.169 18 C 0.299 3.701 19 O -0.438 6.438 20 H 0.077 0.923 21 H 0.064 0.936 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.143 0.857 25 H 0.145 0.855 26 H 0.157 0.843 27 H 0.096 0.904 28 H 0.147 0.853 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.206 -1.328 17.329 17.381 hybrid contribution -0.385 0.606 -1.240 1.433 sum -0.591 -0.722 16.088 16.115 Atomic orbital electron populations 1.22369 0.96648 1.02578 1.00065 1.19228 0.92334 0.94096 0.83088 0.93031 1.21082 1.31597 1.12120 0.90365 0.95043 1.25718 0.97269 1.00160 0.95103 1.70009 1.47305 1.42291 0.98573 0.85887 0.79382 0.79659 0.77794 1.18640 1.17762 1.21354 1.46820 1.46419 1.13917 1.22857 1.22115 0.79152 0.80688 0.88782 1.90699 1.35855 1.67503 1.46203 1.22088 1.05713 0.98928 0.90434 1.21761 1.00175 0.94666 0.97980 1.22078 1.01863 1.00687 0.92281 1.22273 0.75787 0.86427 0.85652 1.90652 1.57114 1.19132 1.76853 0.92329 0.93632 0.91494 0.92172 0.85732 0.85537 0.84267 0.90438 0.85292 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.50 8.57 71.98 0.62 -6.88 15 2 C 0.22 11.14 2.08 44.24 0.09 11.23 15 3 H 0.05 2.83 5.79 -2.39 -0.01 2.82 15 4 C -0.51 -31.58 8.07 25.60 0.21 -31.37 15 5 H 0.03 2.15 7.69 -2.91 -0.02 2.13 15 6 C 0.02 0.96 5.45 84.65 0.46 1.42 15 7 N -0.94 -61.60 13.96 21.45 0.30 -61.30 15 8 Si 0.95 47.64 24.37 68.60 1.67 49.31 15 9 H -0.26 -12.38 6.87 99.48 0.68 -11.70 15 10 H -0.25 -12.18 6.53 99.48 0.65 -11.53 15 11 H -0.29 -13.98 7.11 99.48 0.71 -13.28 15 12 N -0.56 -23.59 2.49 -739.21 -1.84 -25.42 15 13 C 0.50 19.01 6.73 87.72 0.59 19.61 15 14 O -0.53 -25.50 13.81 -2.83 -0.04 -25.54 15 15 C -0.13 -2.72 6.08 29.90 0.18 -2.54 15 16 C -0.11 -1.43 6.08 30.76 0.19 -1.25 15 17 C -0.13 -2.43 6.07 29.89 0.18 -2.25 15 18 C 0.51 18.03 7.48 87.72 0.66 18.68 15 19 O -0.56 -24.59 16.19 -2.86 -0.05 -24.64 15 20 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 21 H 0.05 2.17 3.27 -2.39 -0.01 2.16 15 22 H 0.07 3.29 5.99 -2.39 -0.01 3.28 15 23 H 0.27 16.34 8.31 -92.71 -0.77 15.57 15 24 H 0.12 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.13 2.13 8.14 -2.39 -0.02 2.11 15 26 H 0.14 0.61 8.14 -2.39 -0.02 0.59 15 27 H 0.08 1.05 8.14 -2.38 -0.02 1.03 15 28 H 0.13 1.91 8.14 -2.39 -0.02 1.89 15 29 H 0.13 1.87 8.14 -2.39 -0.02 1.85 15 Total: -1.00 -83.87 235.98 4.30 -79.57 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: 1.07 Total: 1.37 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 3.17 Total: 6.64 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -1.54 Total: -86.72 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -0.09 Total: -50.17 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.67 Total: 49.31 kcal Total: -83.87 4.30 -79.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.283 kcal (2) G-P(sol) polarization free energy of solvation -83.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds