Wall clock time and date at job start Mon Mar 30 2020 02:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.33872 * 122.75825 * 60.02726 * 12 2 1 14 14 O 1.21227 * 125.40340 * 0.02562 * 13 12 2 15 15 C 1.51316 * 109.20641 * 180.02562 * 13 12 2 16 16 C 1.54237 * 103.55465 * 359.97438 * 15 13 12 17 17 H 1.08996 * 110.60765 * 118.67261 * 16 15 13 18 18 C 1.53000 * 110.60627 * 241.48768 * 16 15 13 19 19 C 1.33870 * 122.76354 * 239.73611 * 12 2 1 20 20 O 1.21231 * 125.39806 * 359.97438 * 19 12 2 21 21 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 22 22 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08997 * 110.61109 * 118.51493 * 15 13 12 26 26 H 1.08998 * 110.60948 * 241.32864 * 15 13 12 27 27 H 1.08994 * 109.47308 * 59.99484 * 18 16 15 28 28 H 1.08994 * 109.47246 * 180.02562 * 18 16 15 29 29 H 1.08998 * 109.46904 * 299.99691 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.7295 -1.9704 1.4625 14 8 1.0495 -2.6958 0.7690 15 6 2.3863 -2.3681 2.7664 16 6 3.1131 -1.0826 3.2119 17 1 2.7257 -0.7352 4.1696 18 6 4.6223 -1.3193 3.2971 19 6 2.7947 -0.0955 2.1101 20 8 3.1795 1.0532 2.0639 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.9028 -0.5285 -4.4375 25 1 1.6356 -2.6589 3.5011 26 1 3.0983 -3.1776 2.6061 27 1 4.9992 -1.6171 2.3188 28 1 5.1168 -0.4010 3.6134 29 1 4.8259 -2.1088 4.0206 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048570603.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:21 Heat of formation + Delta-G solvation = -89.430723 kcal Electronic energy + Delta-G solvation = -14530.093257 eV Core-core repulsion = 12031.662046 eV Total energy + Delta-G solvation = -2498.431211 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.79393 -39.47027 -36.97948 -36.57099 -34.43707 -32.21873 -28.83271 -27.34377 -25.61694 -24.02724 -22.27087 -20.19783 -19.00954 -18.20194 -17.47996 -17.04954 -16.66593 -15.61220 -15.27927 -15.10804 -14.90735 -14.65232 -14.27962 -14.09718 -13.72427 -13.35020 -13.20324 -12.80727 -12.48968 -12.21312 -12.04496 -11.76466 -11.67022 -11.07688 -10.93493 -10.73870 -10.45030 -8.42801 -6.49716 0.64936 1.22248 1.28525 1.38181 1.78830 1.99343 2.20175 2.90180 3.24975 3.36969 3.63647 4.03083 4.25774 4.31544 4.42183 4.44353 4.65990 4.71265 4.77302 4.90576 4.99976 5.05417 5.19834 5.32811 5.33965 6.01126 6.22660 6.49304 6.57852 6.95880 7.15672 8.74302 Molecular weight = 211.10amu Principal moments of inertia in cm(-1) A = 0.040072 B = 0.011431 C = 0.010742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.567517 B = 2448.913711 C = 2605.985833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.221 3.779 3 H 0.050 0.950 4 C -0.528 4.528 5 H 0.031 0.969 6 C 0.019 3.981 7 N -0.938 5.938 8 Si 0.948 3.052 9 H -0.258 1.258 10 H -0.249 1.249 11 H -0.287 1.287 12 N -0.567 5.567 13 C 0.509 3.491 14 O -0.517 6.517 15 C -0.136 4.136 16 C -0.108 4.108 17 H 0.161 0.839 18 C -0.135 4.135 19 C 0.514 3.486 20 O -0.533 6.533 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.271 0.729 25 H 0.157 0.843 26 H 0.138 0.862 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 -0.667 16.811 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.119 3.881 3 H 0.067 0.933 4 C -0.566 4.566 5 H 0.050 0.950 6 C -0.180 4.180 7 N -0.577 5.577 8 Si 0.773 3.227 9 H -0.183 1.183 10 H -0.174 1.174 11 H -0.213 1.213 12 N -0.307 5.307 13 C 0.300 3.700 14 O -0.391 6.391 15 C -0.175 4.175 16 C -0.129 4.129 17 H 0.179 0.821 18 C -0.192 4.192 19 C 0.305 3.695 20 O -0.408 6.408 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.174 0.826 26 H 0.155 0.845 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.031 -0.450 16.196 16.202 hybrid contribution -0.374 0.597 -1.246 1.431 sum -0.343 0.147 14.950 14.954 Atomic orbital electron populations 1.22329 0.96159 1.02305 1.00769 1.19258 0.92596 0.93580 0.82705 0.93253 1.21115 1.32391 1.12664 0.90470 0.95033 1.25764 0.97072 1.00220 0.94951 1.70012 1.46832 1.42181 0.98707 0.85875 0.79393 0.79389 0.78052 1.18312 1.17353 1.21341 1.47070 1.45969 1.14851 1.22849 1.21805 0.79177 0.80238 0.88782 1.90710 1.38028 1.55346 1.54988 1.22752 1.02497 0.99295 0.92959 1.22197 1.00360 0.91990 0.98346 0.82121 1.21741 0.90241 1.04224 1.03012 1.21860 0.75293 0.88156 0.84196 1.90663 1.52844 1.19206 1.78120 0.93068 0.92177 0.91573 0.91980 0.82565 0.84454 0.94050 0.91346 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.10 8.65 71.98 0.62 -6.48 15 2 C 0.22 11.08 2.28 44.24 0.10 11.18 15 3 H 0.05 2.59 6.47 -2.38 -0.02 2.57 15 4 C -0.53 -31.84 8.54 25.60 0.22 -31.62 15 5 H 0.03 2.13 7.89 -2.91 -0.02 2.11 15 6 C 0.02 1.13 5.45 84.66 0.46 1.59 15 7 N -0.94 -60.20 13.96 21.45 0.30 -59.90 15 8 Si 0.95 45.84 24.37 68.60 1.67 47.51 15 9 H -0.26 -11.69 6.87 99.48 0.68 -11.01 15 10 H -0.25 -11.37 6.53 99.48 0.65 -10.72 15 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 15 12 N -0.57 -23.73 2.47 -738.13 -1.82 -25.56 15 13 C 0.51 19.19 7.31 87.99 0.64 19.84 15 14 O -0.52 -24.24 15.72 -2.87 -0.05 -24.29 15 15 C -0.14 -2.79 6.67 30.46 0.20 -2.58 15 16 C -0.11 -2.22 3.70 -10.92 -0.04 -2.26 15 17 H 0.16 2.02 8.14 -2.39 -0.02 2.00 15 18 C -0.13 -2.36 9.09 71.98 0.65 -1.71 15 19 C 0.51 18.32 7.40 87.99 0.65 18.98 15 20 O -0.53 -22.55 17.23 -2.88 -0.05 -22.60 15 21 H 0.05 2.31 3.27 -2.39 -0.01 2.31 15 22 H 0.06 2.83 6.65 -2.39 -0.02 2.81 15 23 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 24 H 0.27 16.11 8.31 -92.71 -0.77 15.34 15 25 H 0.16 1.94 8.14 -2.39 -0.02 1.93 15 26 H 0.14 2.31 7.74 -2.39 -0.02 2.29 15 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 15 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 15 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 15 Total: -1.00 -80.08 242.52 4.64 -75.44 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: 1.07 Total: 2.45 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 3.51 Total: 6.94 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -1.52 Total: -85.46 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.09 Total: -46.88 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -80.08 4.64 -75.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048570603.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.989 kcal (2) G-P(sol) polarization free energy of solvation -80.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds