Wall clock time and date at job start Mon Mar 30 2020 03:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47222 * 2 1 4 4 C 1.50698 * 109.46861 * 119.99420 * 2 1 3 5 5 C 1.34947 * 126.63216 * 119.97956 * 4 2 1 6 6 C 1.50697 * 125.48999 * 0.02562 * 5 4 2 7 7 O 1.42901 * 109.47292 * 89.99847 * 6 5 4 8 8 N 1.33458 * 109.02466 * 179.97438 * 5 4 2 9 9 N 1.28754 * 109.98860 * 359.70946 * 8 5 4 10 10 N 1.36665 * 126.63974 * 299.97452 * 4 2 1 11 11 C 1.37566 * 126.88462 * 0.02562 * 10 4 2 12 12 H 1.08003 * 120.00315 * 3.93422 * 11 10 4 13 13 C 1.39011 * 120.00131 * 183.93837 * 11 10 4 14 14 N 1.31259 * 119.99513 * 353.37999 * 13 11 10 15 15 Si 1.86799 * 120.00125 * 173.66097 * 13 11 10 16 16 H 1.48497 * 109.47203 * 94.97308 * 15 13 11 17 17 H 1.48505 * 109.46949 * 214.96924 * 15 13 11 18 18 H 1.48495 * 109.47036 * 334.96979 * 15 13 11 19 19 H 1.08999 * 109.47384 * 300.00626 * 1 2 3 20 20 H 1.09003 * 109.46793 * 60.00137 * 1 2 3 21 21 H 1.09003 * 109.46817 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47627 * 240.00097 * 2 1 3 23 23 H 1.08990 * 109.47338 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46697 * 299.99983 * 3 2 1 25 25 H 1.09000 * 109.47004 * 59.99130 * 3 2 1 26 26 H 1.09001 * 109.47214 * 210.00255 * 6 5 4 27 27 H 1.08999 * 109.47080 * 329.99783 * 6 5 4 28 28 H 0.96696 * 114.00139 * 179.97438 * 7 6 5 29 29 H 0.97008 * 119.99245 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8108 -1.8120 1.2629 6 6 3.3328 -2.5502 0.0572 7 8 4.5980 -2.0060 -0.3236 8 7 3.0451 -2.1420 2.5346 9 7 2.4621 -1.3055 3.3209 10 7 1.7875 -0.3633 2.5295 11 6 1.0357 0.7002 2.9725 12 1 0.5144 1.3258 2.2630 13 6 0.9470 0.9698 4.3333 14 7 1.4711 0.1377 5.2027 15 14 0.0752 2.5123 4.9250 16 1 -1.3350 2.1871 5.2577 17 1 0.7609 3.0356 6.1338 18 1 0.1067 3.5404 3.8539 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 3.1300 1.4426 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 3.4498 -3.6063 0.3003 27 1 2.6281 -2.4432 -0.7675 28 1 4.9944 -2.4344 -1.0946 29 1 1.4088 0.3257 6.1523 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062295543.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:09 Heat of formation + Delta-G solvation = 25.800580 kcal Electronic energy + Delta-G solvation = -14387.145140 eV Core-core repulsion = 11926.003484 eV Total energy + Delta-G solvation = -2461.141655 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.28515 -36.12393 -35.01729 -33.86274 -31.06176 -29.23723 -26.54048 -26.15814 -24.33633 -22.16305 -20.30075 -18.81432 -17.36140 -16.84487 -15.34348 -14.69053 -14.48481 -13.92219 -13.60864 -13.45413 -13.02303 -12.38075 -11.92876 -11.69209 -11.57031 -11.41496 -11.22701 -10.87941 -10.65767 -10.58473 -10.25243 -9.91246 -9.49713 -9.40930 -9.02644 -8.61474 -7.30565 -6.80962 -4.58279 2.81619 2.95693 3.02008 3.30530 3.69040 3.94825 4.59579 4.81642 5.27881 5.48827 5.61434 5.78182 5.84234 5.87620 6.14245 6.15517 6.23727 6.39324 6.45134 6.54641 6.65495 6.87503 6.98546 7.05154 7.28253 7.77770 7.92885 8.20356 8.54230 9.16544 10.16154 10.23537 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.035640 B = 0.011816 C = 0.009721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.440419 B = 2369.180706 C = 2879.791923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.000 4.000 3 C -0.147 4.147 4 C -0.061 4.061 5 C -0.079 4.079 6 C 0.177 3.823 7 O -0.570 6.570 8 N -0.316 5.316 9 N -0.093 5.093 10 N -0.141 5.141 11 C -0.311 4.311 12 H 0.125 0.875 13 C 0.047 3.953 14 N -0.758 5.758 15 Si 0.936 3.064 16 H -0.268 1.268 17 H -0.272 1.272 18 H -0.260 1.260 19 H 0.065 0.935 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.365 0.635 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 2.288 -8.786 9.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 C -0.205 4.205 4 C -0.197 4.197 5 C -0.226 4.226 6 C 0.098 3.902 7 O -0.373 6.373 8 N -0.176 5.176 9 N -0.070 5.070 10 N 0.089 4.911 11 C -0.448 4.448 12 H 0.143 0.857 13 C -0.173 4.173 14 N -0.384 5.384 15 Si 0.759 3.241 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.183 1.183 19 H 0.084 0.916 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.210 0.790 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.155 2.071 -6.507 7.160 hybrid contribution -0.587 0.696 -1.029 1.374 sum -2.742 2.767 -7.535 8.483 Atomic orbital electron populations 1.21919 0.95503 1.01613 1.01665 1.19267 0.94707 0.95051 0.93064 1.21860 1.01196 0.95935 1.01501 1.20743 1.10194 1.01854 0.86931 1.20121 1.08728 1.00961 0.92827 1.19953 0.83550 0.94605 0.92134 1.86677 1.36256 1.63126 1.51217 1.73981 1.20029 1.22651 1.00986 1.82548 1.14377 0.98254 1.11779 1.46536 1.25265 1.16334 1.03007 1.20212 1.27162 1.04354 0.93030 0.85728 1.25796 0.96599 0.99225 0.95704 1.70163 1.32698 1.32454 1.03120 0.85767 0.79197 0.79815 0.79298 1.19291 1.19691 1.18334 0.91558 0.93256 0.93099 0.90707 0.92872 0.93390 0.91577 0.93597 0.93622 0.79029 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.06 37.16 0.34 -2.21 15 2 C 0.00 0.00 3.02 -91.77 -0.28 -0.28 15 3 C -0.15 -2.63 9.06 37.16 0.34 -2.30 15 4 C -0.06 -1.49 5.61 -81.61 -0.46 -1.95 15 5 C -0.08 -1.99 6.73 -83.06 -0.56 -2.55 15 6 C 0.18 3.41 7.22 36.00 0.26 3.67 15 7 O -0.57 -10.55 13.64 -35.23 -0.48 -11.03 15 8 N -0.32 -9.10 12.33 33.16 0.41 -8.69 15 9 N -0.09 -2.84 11.75 60.35 0.71 -2.13 15 10 N -0.14 -3.88 3.78 -7.77 -0.03 -3.91 15 11 C -0.31 -7.97 8.60 -14.69 -0.13 -8.10 15 12 H 0.13 2.85 4.58 -52.48 -0.24 2.61 15 13 C 0.05 1.16 5.49 -17.51 -0.10 1.07 15 14 N -0.76 -20.72 11.91 55.50 0.66 -20.05 15 15 Si 0.94 18.23 29.56 -169.99 -5.02 13.20 15 16 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 18 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 19 H 0.07 1.22 5.67 -51.93 -0.29 0.93 15 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 22 H 0.07 1.29 6.79 -51.93 -0.35 0.94 15 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 25 H 0.07 1.27 5.83 -51.93 -0.30 0.96 15 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.05 0.74 7.12 -51.93 -0.37 0.37 15 28 H 0.36 4.32 9.12 45.56 0.42 4.74 15 29 H 0.28 6.96 8.31 -40.82 -0.34 6.63 15 LS Contribution 247.20 15.07 3.73 3.73 Total: -1.00 -33.37 247.20 -3.01 -36.38 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -2.39 Total: 5.16 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.58 Total: -12.66 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 1.75 Total: -34.78 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.48 Total: -11.03 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.20 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.37 -3.01 -36.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295543.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.178 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds