Wall clock time and date at job start Mon Mar 30 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47423 * 2 1 4 4 C 1.52997 * 109.47102 * 120.00287 * 2 1 3 5 5 H 1.09004 * 109.47333 * 299.99679 * 4 2 1 6 6 N 1.46900 * 109.47351 * 179.97438 * 4 2 1 7 7 C 1.50704 * 109.47387 * 59.99660 * 4 2 1 8 8 N 1.31132 * 126.05409 * 75.02342 * 7 4 2 9 9 N 1.28684 * 109.58594 * 179.97438 * 8 7 4 10 10 C 1.32843 * 109.00899 * 0.02562 * 9 8 7 11 11 C 1.39914 * 126.46950 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00278 * 179.97438 * 11 10 9 13 13 C 1.40344 * 119.99292 * 359.97438 * 11 10 9 14 14 N 1.30619 * 120.00493 * 0.02562 * 13 11 10 15 15 Si 1.86810 * 119.99522 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46690 * 60.00242 * 15 13 11 17 17 H 1.48499 * 109.46928 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47072 * 300.00283 * 15 13 11 19 19 O 1.34298 * 126.06067 * 254.98545 * 7 4 2 20 20 H 1.09000 * 109.47824 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47179 * 299.99998 * 1 2 3 22 22 H 1.08999 * 109.47318 * 59.99812 * 1 2 3 23 23 H 1.09002 * 109.47179 * 240.00002 * 2 1 3 24 24 H 1.09000 * 109.46992 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47026 * 300.00366 * 3 2 1 26 26 H 1.09004 * 109.46893 * 60.00394 * 3 2 1 27 27 H 1.00903 * 111.00081 * 176.04650 * 6 4 2 28 28 H 1.00903 * 111.00066 * 299.99894 * 6 4 2 29 29 H 0.97008 * 120.00143 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1392 6 7 3.5089 -0.7219 1.2489 7 6 1.5375 -2.1421 1.2492 8 7 1.9873 -3.1198 0.4999 9 7 1.3330 -4.1973 0.7581 10 6 0.4281 -3.9399 1.6961 11 6 -0.4791 -4.8504 2.2488 12 1 -1.1728 -4.5267 3.0104 13 6 -0.4873 -6.1845 1.8132 14 7 0.3521 -6.5763 0.8923 15 14 -1.6981 -7.4005 2.5516 16 1 -3.0849 -6.9325 2.3006 17 1 -1.5042 -8.7335 1.9266 18 1 -1.4672 -7.5022 4.0150 19 8 0.5504 -2.6316 2.0171 20 1 -0.3635 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 3.8705 -1.1356 2.0952 28 1 3.8702 -1.1931 0.4331 29 1 0.3461 -7.4983 0.5911 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083340481.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:31 Heat of formation + Delta-G solvation = -23.923256 kcal Electronic energy + Delta-G solvation = -14062.281071 eV Core-core repulsion = 11598.983228 eV Total energy + Delta-G solvation = -2463.297843 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.79011 -38.32035 -36.13314 -35.77262 -33.40139 -31.47725 -28.59284 -27.65949 -25.92730 -23.66896 -22.76708 -20.96143 -19.63611 -17.73564 -17.41716 -17.03979 -16.58299 -15.89093 -15.72492 -15.20660 -14.59553 -13.62826 -13.51105 -13.40806 -13.05837 -13.05240 -12.89776 -12.53176 -12.13070 -12.03897 -11.92633 -11.89121 -11.66622 -11.41527 -10.86234 -10.21450 -9.86809 -8.79453 -7.00049 0.93520 1.35543 1.53315 1.54299 2.06152 2.20294 2.42939 3.04151 3.41569 3.87706 3.98565 4.02395 4.35874 4.51395 4.66224 4.71471 4.82928 4.97797 5.02028 5.10006 5.20122 5.26726 5.41571 5.53814 5.61595 5.96062 5.98618 6.18548 6.38009 6.47062 8.16657 8.42659 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.063266 B = 0.007769 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.471294 B = 3603.374572 C = 3768.098552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 C -0.124 4.124 4 C 0.215 3.785 5 H 0.102 0.898 6 N -0.804 5.804 7 C 0.007 3.993 8 N -0.310 5.310 9 N -0.407 5.407 10 C 0.257 3.743 11 C -0.452 4.452 12 H 0.109 0.891 13 C 0.027 3.973 14 N -0.769 5.769 15 Si 1.022 2.978 16 H -0.250 1.250 17 H -0.261 1.261 18 H -0.250 1.250 19 O -0.285 6.285 20 H 0.010 0.990 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.345 0.655 28 H 0.347 0.653 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.973 8.028 1.595 8.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 C -0.181 4.181 4 C 0.100 3.900 5 H 0.120 0.880 6 N -0.332 5.332 7 C -0.209 4.209 8 N -0.158 5.158 9 N -0.261 5.261 10 C 0.072 3.928 11 C -0.488 4.488 12 H 0.127 0.873 13 C -0.196 4.196 14 N -0.393 5.393 15 Si 0.838 3.162 16 H -0.174 1.174 17 H -0.185 1.185 18 H -0.174 1.174 19 O -0.173 6.173 20 H 0.029 0.971 21 H 0.086 0.914 22 H 0.095 0.905 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.188 8.023 0.529 8.043 hybrid contribution -1.108 -1.298 0.979 1.967 sum -1.296 6.725 1.508 7.013 Atomic orbital electron populations 1.21761 0.95256 0.99709 1.03048 1.21079 0.95418 0.97959 0.95322 1.21635 1.02054 0.92161 1.02224 1.19929 0.88229 0.80957 1.00838 0.88040 1.59313 1.03770 1.61290 1.08816 1.29223 0.93703 1.01597 0.96349 1.73899 1.23684 0.97204 1.20991 1.75606 1.12895 1.16261 1.21309 1.24344 0.96369 0.79284 0.92815 1.18834 1.15622 0.92746 1.21603 0.87297 1.27239 0.98228 0.99916 0.94179 1.70022 1.29573 1.19513 1.20178 0.84692 0.77125 0.75148 0.79259 1.17415 1.18532 1.17381 1.84728 1.49761 1.25631 1.57140 0.97057 0.91359 0.90490 0.92599 0.91226 0.91604 0.91904 0.84315 0.83980 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 8.95 71.98 0.64 -3.77 15 2 C -0.08 -2.40 2.65 -10.80 -0.03 -2.43 15 3 C -0.12 -2.80 9.04 71.98 0.65 -2.15 15 4 C 0.22 7.54 2.88 44.17 0.13 7.67 15 5 H 0.10 3.30 8.14 -2.38 -0.02 3.28 15 6 N -0.80 -24.48 8.45 -171.80 -1.45 -25.93 15 7 C 0.01 0.33 6.03 88.21 0.53 0.86 15 8 N -0.31 -17.20 12.11 -164.71 -1.99 -19.20 15 9 N -0.41 -25.47 10.52 -169.76 -1.79 -27.26 15 10 C 0.26 15.46 7.85 84.95 0.67 16.13 15 11 C -0.45 -25.12 9.46 23.19 0.22 -24.90 15 12 H 0.11 5.48 7.85 -2.91 -0.02 5.46 15 13 C 0.03 1.35 5.50 85.39 0.47 1.82 15 14 N -0.77 -42.48 11.93 21.90 0.26 -42.22 15 15 Si 1.02 36.58 29.56 68.60 2.03 38.60 15 16 H -0.25 -8.49 7.11 99.48 0.71 -7.78 15 17 H -0.26 -8.77 7.11 99.48 0.71 -8.06 15 18 H -0.25 -8.46 7.11 99.48 0.71 -7.75 15 19 O -0.28 -15.62 10.90 -12.16 -0.13 -15.75 15 20 H 0.01 0.42 7.22 -2.39 -0.02 0.41 15 21 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 24 H 0.07 1.57 7.60 -2.39 -0.02 1.55 15 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 15 26 H 0.06 1.29 8.14 -2.38 -0.02 1.27 15 27 H 0.34 10.24 9.06 -89.69 -0.81 9.42 15 28 H 0.35 11.14 8.87 -89.69 -0.80 10.35 15 29 H 0.30 14.44 8.29 -92.70 -0.77 13.67 15 Total: -1.00 -69.40 254.90 -0.23 -69.63 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.43 Total: 28.89 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 3.28 Total: -6.76 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -4.97 Total: -114.61 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.13 Total: -15.75 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.60 kcal Total: -69.40 -0.23 -69.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083340481.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.702 kcal (2) G-P(sol) polarization free energy of solvation -69.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds