Wall clock time and date at job start Mon Mar 30 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27570 * 126.41449 * 2 1 4 4 N 1.39155 * 113.16148 * 179.97438 * 3 2 1 5 5 C 1.46503 * 124.43426 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46910 * 269.97600 * 5 4 3 7 7 H 1.07997 * 120.00179 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99708 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00068 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99916 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46911 * 89.99895 * 10 8 6 12 12 H 1.48495 * 109.46997 * 210.00052 * 10 8 6 13 13 H 1.48497 * 109.47006 * 330.00038 * 10 8 6 14 14 C 1.34954 * 111.12213 * 0.02562 * 4 3 2 15 15 O 1.21298 * 127.49558 * 179.97438 * 14 4 3 16 16 C 1.51438 * 126.41873 * 179.97438 * 2 1 3 17 17 H 1.09004 * 110.60839 * 61.51413 * 16 2 1 18 18 C 1.53009 * 110.73812 * 298.61230 * 16 2 1 19 19 N 1.46898 * 109.46968 * 179.34307 * 18 16 2 20 20 H 1.09003 * 109.47122 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47777 * 120.02237 * 1 2 3 22 22 H 1.09003 * 109.47147 * 240.02242 * 1 2 3 23 23 H 1.08993 * 109.47541 * 29.98088 * 5 4 3 24 24 H 1.09006 * 109.46527 * 149.97950 * 5 4 3 25 25 H 0.96998 * 120.00132 * 180.02562 * 9 8 6 26 26 H 1.08999 * 109.46533 * 299.33843 * 18 16 2 27 27 H 1.08998 * 109.46575 * 59.33863 * 18 16 2 28 28 H 1.00899 * 111.00530 * 56.03983 * 19 18 16 29 29 H 1.00895 * 110.99933 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 0.0006 5 6 4.7021 1.6938 0.0012 6 6 5.0746 2.0317 -1.4194 7 1 4.5560 1.5595 -2.2405 8 6 6.0776 2.9439 -1.6707 9 7 6.7095 3.5186 -0.6707 10 14 6.5398 3.3623 -3.4316 11 1 5.7201 4.5088 -3.8994 12 1 7.9786 3.7247 -3.4928 13 1 6.2882 2.1859 -4.3022 14 6 3.8035 -0.6292 0.0004 15 8 4.8579 -1.2289 0.0004 16 6 2.4060 -1.2186 0.0005 17 1 2.2422 -1.8167 -0.8959 18 6 2.1763 -2.0609 1.2571 19 7 3.0494 -3.2417 1.2215 20 1 -0.3633 1.0277 -0.0005 21 1 -0.3634 -0.5141 -0.8897 22 1 -0.3633 -0.5135 0.8902 23 1 4.3714 2.5965 0.5147 24 1 5.5695 1.2802 0.5158 25 1 7.4148 4.1605 -0.8475 26 1 2.4063 -1.4654 2.1406 27 1 1.1347 -2.3800 1.2951 28 1 4.0168 -2.9732 1.1211 29 1 2.9161 -3.8148 2.0411 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086109028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:57 Heat of formation + Delta-G solvation = 12.029026 kcal Electronic energy + Delta-G solvation = -13973.375092 eV Core-core repulsion = 11511.636258 eV Total energy + Delta-G solvation = -2461.738835 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.77719 -36.83860 -35.10158 -33.46437 -32.10208 -29.16173 -28.85669 -26.39263 -23.82491 -22.30005 -20.26662 -18.98990 -16.76497 -16.33877 -15.94456 -15.37162 -14.56476 -14.45900 -13.93426 -13.85650 -13.39742 -12.85071 -12.46468 -12.39439 -12.32898 -11.93068 -11.50291 -11.42124 -10.85837 -10.75910 -10.41176 -10.06058 -9.64600 -9.04055 -8.69597 -8.52863 -7.82596 -6.15005 -4.20712 2.03734 3.19691 3.27658 3.32703 3.33870 3.40294 4.22901 4.27195 4.38262 4.83147 4.95027 5.17423 5.20344 5.41997 5.57274 5.61255 5.66641 5.82069 6.08849 6.45661 7.02146 7.11946 7.19735 7.28586 7.49338 7.79842 8.03909 8.41178 8.58133 8.84206 9.44311 10.93379 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.040558 B = 0.008633 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.204733 B = 3242.773081 C = 3563.046480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.052 3.948 3 N -0.213 5.213 4 N -0.442 5.442 5 C 0.266 3.734 6 C -0.533 4.533 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.894 5.894 10 Si 0.905 3.095 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.493 3.507 15 O -0.503 6.503 16 C -0.142 4.142 17 H 0.131 0.869 18 C 0.097 3.903 19 N -0.853 5.853 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.266 0.734 26 H 0.029 0.971 27 H 0.085 0.915 28 H 0.357 0.643 29 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.954 -8.208 3.598 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.142 4.142 3 N -0.020 5.020 4 N -0.261 5.261 5 C 0.149 3.851 6 C -0.572 4.572 7 H 0.078 0.922 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.732 3.268 11 H -0.204 1.204 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.279 3.721 15 O -0.376 6.376 16 C -0.166 4.166 17 H 0.149 0.851 18 C -0.035 4.035 19 N -0.386 5.386 20 H 0.099 0.901 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.104 0.896 28 H 0.173 0.827 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.334 -7.467 2.985 13.896 hybrid contribution 0.904 -0.009 -0.186 0.923 sum -10.429 -7.475 2.799 13.133 Atomic orbital electron populations 1.20207 0.85480 1.04039 1.02999 1.25056 0.97079 0.90250 1.01793 1.74560 0.90841 1.26997 1.09571 1.50412 1.02390 1.07104 1.66188 1.19470 0.81152 0.86005 0.98483 1.21354 1.19205 1.24872 0.91743 0.92248 1.24922 0.95525 0.95463 0.97983 1.69920 1.23974 1.28382 1.30929 0.86381 0.77688 0.78747 0.83983 1.20378 1.20890 1.19791 1.21145 0.90435 0.83597 0.76927 1.90676 1.30875 1.66206 1.49869 1.21830 0.94496 0.97425 1.02886 0.85115 1.21294 0.98387 0.90405 0.93453 1.58732 1.12653 1.20661 1.46584 0.90135 0.90042 0.90238 0.93461 0.93116 0.92416 0.95324 0.89647 0.82732 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.49 36.00 0.38 -0.28 15 2 C 0.05 0.80 6.94 -78.73 -0.55 0.25 15 3 N -0.21 -4.31 12.02 35.53 0.43 -3.89 15 4 N -0.44 -10.46 3.52 -61.07 -0.22 -10.67 15 5 C 0.27 7.29 5.99 -5.19 -0.03 7.26 15 6 C -0.53 -15.66 9.39 -34.44 -0.32 -15.98 15 7 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 8 C 0.06 1.85 5.46 -17.82 -0.10 1.75 15 9 N -0.89 -26.60 13.29 55.43 0.74 -25.86 15 10 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 15 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 15 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 15 14 C 0.49 10.84 7.58 -10.43 -0.08 10.76 15 15 O -0.50 -12.31 16.14 5.54 0.09 -12.23 15 16 C -0.14 -2.28 3.27 -92.08 -0.30 -2.58 15 17 H 0.13 1.99 8.14 -51.93 -0.42 1.57 15 18 C 0.10 1.26 6.32 -3.82 -0.02 1.23 15 19 N -0.85 -11.31 9.62 -10.37 -0.10 -11.41 15 20 H 0.08 0.77 8.14 -51.93 -0.42 0.34 15 21 H 0.08 0.64 8.14 -51.93 -0.42 0.21 15 22 H 0.08 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.05 1.33 8.14 -51.93 -0.42 0.90 15 24 H 0.05 1.48 8.04 -51.93 -0.42 1.06 15 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 15 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 28 H 0.36 5.62 6.99 -39.29 -0.27 5.34 15 29 H 0.34 3.49 9.08 -39.29 -0.36 3.13 15 LS Contribution 258.11 15.07 3.89 3.89 Total: -1.00 -33.20 258.11 -4.77 -37.97 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.55 Total: 2.66 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.02 Total: 2.40 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.85 Total: -51.83 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.20 -4.77 -37.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086109028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.002 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds