Wall clock time and date at job start Mon Mar 30 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27570 * 126.41449 * 2 1 4 4 N 1.39155 * 113.16148 * 179.97438 * 3 2 1 5 5 C 1.46503 * 124.43426 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46910 * 269.97600 * 5 4 3 7 7 H 1.07997 * 120.00179 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99708 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00068 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99916 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46911 * 89.99895 * 10 8 6 12 12 H 1.48495 * 109.46997 * 210.00052 * 10 8 6 13 13 H 1.48497 * 109.47006 * 330.00038 * 10 8 6 14 14 C 1.34954 * 111.12213 * 0.02562 * 4 3 2 15 15 O 1.21298 * 127.49558 * 179.97438 * 14 4 3 16 16 C 1.51438 * 126.41873 * 179.97438 * 2 1 3 17 17 H 1.09004 * 110.60839 * 61.51413 * 16 2 1 18 18 C 1.53009 * 110.73812 * 298.61230 * 16 2 1 19 19 N 1.46898 * 109.46968 * 179.34307 * 18 16 2 20 20 H 1.09003 * 109.47122 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47777 * 120.02237 * 1 2 3 22 22 H 1.09003 * 109.47147 * 240.02242 * 1 2 3 23 23 H 1.08993 * 109.47541 * 29.98088 * 5 4 3 24 24 H 1.09006 * 109.46527 * 149.97950 * 5 4 3 25 25 H 0.96998 * 120.00132 * 180.02562 * 9 8 6 26 26 H 1.08999 * 109.46533 * 299.33843 * 18 16 2 27 27 H 1.08998 * 109.46575 * 59.33863 * 18 16 2 28 28 H 1.00899 * 111.00530 * 56.03983 * 19 18 16 29 29 H 1.00895 * 110.99933 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 0.0006 5 6 4.7021 1.6938 0.0012 6 6 5.0746 2.0317 -1.4194 7 1 4.5560 1.5595 -2.2405 8 6 6.0776 2.9439 -1.6707 9 7 6.7095 3.5186 -0.6707 10 14 6.5398 3.3623 -3.4316 11 1 5.7201 4.5088 -3.8994 12 1 7.9786 3.7247 -3.4928 13 1 6.2882 2.1859 -4.3022 14 6 3.8035 -0.6292 0.0004 15 8 4.8579 -1.2289 0.0004 16 6 2.4060 -1.2186 0.0005 17 1 2.2422 -1.8167 -0.8959 18 6 2.1763 -2.0609 1.2571 19 7 3.0494 -3.2417 1.2215 20 1 -0.3633 1.0277 -0.0005 21 1 -0.3634 -0.5141 -0.8897 22 1 -0.3633 -0.5135 0.8902 23 1 4.3714 2.5965 0.5147 24 1 5.5695 1.2802 0.5158 25 1 7.4148 4.1605 -0.8475 26 1 2.4063 -1.4654 2.1406 27 1 1.1347 -2.3800 1.2951 28 1 4.0168 -2.9732 1.1211 29 1 2.9161 -3.8148 2.0411 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086109028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:57 Heat of formation + Delta-G solvation = -15.049333 kcal Electronic energy + Delta-G solvation = -13974.549298 eV Core-core repulsion = 11511.636258 eV Total energy + Delta-G solvation = -2462.913041 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.30816 -38.50056 -36.50724 -35.28774 -33.78109 -30.64865 -30.22866 -28.08463 -25.49914 -23.90624 -21.70482 -20.50918 -18.89645 -17.91725 -17.40024 -16.87085 -16.41643 -15.93657 -15.38755 -15.18775 -14.54460 -14.45375 -14.11344 -13.74857 -13.55356 -13.28248 -13.15360 -13.03090 -12.71940 -12.54970 -12.36924 -11.67724 -11.57490 -10.79764 -10.58975 -9.75382 -9.57024 -8.35863 -6.52956 0.67231 1.31720 1.35228 1.44835 1.60766 1.73092 2.31677 2.82466 2.95818 3.04309 3.69241 3.81133 4.00063 4.31743 4.61958 4.65717 4.74556 4.83108 4.87689 4.96069 5.22100 5.32215 5.52438 5.62440 5.82571 6.01985 6.49069 6.51318 6.77838 7.01197 7.18852 8.72198 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.040558 B = 0.008633 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.204733 B = 3242.773081 C = 3563.046480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.101 3.899 3 N -0.272 5.272 4 N -0.464 5.464 5 C 0.282 3.718 6 C -0.557 4.557 7 H 0.048 0.952 8 C 0.014 3.986 9 N -0.923 5.923 10 Si 0.977 3.023 11 H -0.263 1.263 12 H -0.271 1.271 13 H -0.273 1.273 14 C 0.471 3.529 15 O -0.546 6.546 16 C -0.131 4.131 17 H 0.149 0.851 18 C 0.102 3.898 19 N -0.857 5.857 20 H 0.083 0.917 21 H 0.113 0.887 22 H 0.120 0.880 23 H 0.028 0.972 24 H 0.016 0.984 25 H 0.273 0.727 26 H 0.020 0.980 27 H 0.134 0.866 28 H 0.341 0.659 29 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.617 -9.229 2.805 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 N -0.079 5.079 4 N -0.282 5.282 5 C 0.163 3.837 6 C -0.595 4.595 7 H 0.066 0.934 8 C -0.186 4.186 9 N -0.562 5.562 10 Si 0.800 3.200 11 H -0.188 1.188 12 H -0.196 1.196 13 H -0.198 1.198 14 C 0.260 3.740 15 O -0.423 6.423 16 C -0.155 4.155 17 H 0.166 0.834 18 C -0.030 4.030 19 N -0.390 5.390 20 H 0.102 0.898 21 H 0.132 0.868 22 H 0.138 0.862 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.082 0.918 26 H 0.038 0.962 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.053 -8.497 2.217 16.571 hybrid contribution 1.593 0.221 0.122 1.613 sum -12.460 -8.276 2.339 15.140 Atomic orbital electron populations 1.20633 0.80410 1.05475 1.06344 1.26248 0.99264 0.88512 0.95198 1.74647 0.89097 1.28892 1.15222 1.50237 1.03618 1.07023 1.67277 1.18829 0.81752 0.86004 0.97150 1.21548 1.20063 1.25700 0.92162 0.93384 1.25892 0.95014 0.94907 1.02833 1.70025 1.24263 1.28625 1.33279 0.85279 0.78002 0.78704 0.78017 1.18765 1.19621 1.19762 1.22201 0.92565 0.83253 0.76015 1.90626 1.33026 1.66807 1.51876 1.21928 0.90300 0.97892 1.05409 0.83355 1.21446 1.00791 0.89787 0.91015 1.58755 1.11594 1.20863 1.47740 0.89822 0.86828 0.86218 0.95436 0.96587 0.91801 0.96192 0.84780 0.84598 0.82814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.49 71.24 0.75 -0.23 15 2 C 0.10 2.82 6.94 46.83 0.33 3.15 15 3 N -0.27 -11.05 12.02 -40.85 -0.49 -11.54 15 4 N -0.46 -22.92 3.52 -465.40 -1.64 -24.56 15 5 C 0.28 16.52 5.99 85.63 0.51 17.04 15 6 C -0.56 -34.12 9.39 25.60 0.24 -33.88 15 7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 15 8 C 0.01 0.81 5.46 84.66 0.46 1.27 15 9 N -0.92 -56.56 13.29 21.45 0.28 -56.27 15 10 Si 0.98 45.94 29.54 68.60 2.03 47.96 15 11 H -0.26 -11.67 7.11 99.48 0.71 -10.97 15 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 13 H -0.27 -12.72 7.11 99.48 0.71 -12.01 15 14 C 0.47 21.33 7.58 87.94 0.67 21.99 15 15 O -0.55 -28.16 16.14 -3.08 -0.05 -28.21 15 16 C -0.13 -3.95 3.27 -11.74 -0.04 -3.99 15 17 H 0.15 4.06 8.14 -2.39 -0.02 4.04 15 18 C 0.10 2.30 6.32 86.31 0.55 2.85 15 19 N -0.86 -20.98 9.62 -186.71 -1.80 -22.78 15 20 H 0.08 1.22 8.14 -2.39 -0.02 1.20 15 21 H 0.11 1.03 8.14 -2.39 -0.02 1.01 15 22 H 0.12 0.87 8.14 -2.39 -0.02 0.85 15 23 H 0.03 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.02 1.03 8.04 -2.38 -0.02 1.01 15 25 H 0.27 15.46 8.31 -92.71 -0.77 14.69 15 26 H 0.02 0.50 8.14 -2.39 -0.02 0.48 15 27 H 0.13 1.81 8.14 -2.39 -0.02 1.79 15 28 H 0.34 10.68 6.99 -89.69 -0.63 10.05 15 29 H 0.36 6.47 9.08 -89.70 -0.81 5.66 15 Total: -1.00 -77.78 258.11 1.53 -76.26 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -0.27 Total: 10.95 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 3.46 Total: 8.19 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -3.64 Total: -115.16 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.05 Total: -28.21 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -77.78 1.53 -76.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086109028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.208 kcal (2) G-P(sol) polarization free energy of solvation -77.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds