Wall clock time and date at job start Mon Mar 30 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 H 1.09004 * 109.47269 * 305.30231 * 3 2 1 5 5 O 1.42898 * 109.47244 * 65.30298 * 3 2 1 6 6 C 1.42900 * 114.00286 * 205.18502 * 5 3 2 7 7 C 1.50697 * 109.47328 * 185.30339 * 3 2 1 8 8 N 1.31316 * 126.08038 * 305.02496 * 7 3 2 9 9 N 1.28564 * 110.20852 * 179.97438 * 8 7 3 10 10 C 1.33022 * 109.35426 * 359.97438 * 9 8 7 11 11 C 1.40131 * 126.65485 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99961 * 180.02562 * 11 10 9 13 13 C 1.40243 * 119.99856 * 359.75160 * 11 10 9 14 14 N 1.30680 * 120.00068 * 0.27621 * 13 11 10 15 15 Si 1.86799 * 119.99853 * 180.27350 * 13 11 10 16 16 H 1.48501 * 109.47295 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47093 * 120.00048 * 15 13 11 18 18 H 1.48502 * 109.47031 * 240.00408 * 15 13 11 19 19 N 1.35302 * 126.07658 * 125.29468 * 7 3 2 20 20 H 0.96998 * 127.04822 * 0.02952 * 19 7 3 21 21 H 1.08997 * 109.47142 * 174.99100 * 1 2 3 22 22 H 1.08995 * 109.47319 * 294.99907 * 1 2 3 23 23 H 1.09009 * 109.47078 * 54.99600 * 1 2 3 24 24 H 1.09000 * 109.47555 * 240.00172 * 2 1 3 25 25 H 1.08996 * 109.47383 * 119.99605 * 2 1 3 26 26 H 1.09006 * 109.47112 * 64.97443 * 6 5 3 27 27 H 1.09003 * 109.47302 * 184.97449 * 6 5 3 28 28 H 1.08995 * 109.47331 * 304.97810 * 6 5 3 29 29 H 0.96997 * 120.00248 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6012 1.9831 -0.8387 5 8 1.6680 2.0793 1.2240 6 6 1.5673 3.5017 1.1320 7 6 3.5412 1.4446 -0.1313 8 7 4.3865 0.8101 0.6479 9 7 5.5936 1.0219 0.2593 10 6 5.5803 1.8165 -0.8075 11 6 6.6946 2.2770 -1.5215 12 1 6.5589 2.9225 -2.3767 13 6 7.9863 1.9045 -1.1221 14 7 8.1505 1.1235 -0.0873 15 14 9.4721 2.5246 -2.0693 16 1 9.0198 3.3873 -3.1903 17 1 10.3451 3.3111 -1.1613 18 1 10.2326 1.3690 -2.6092 19 7 4.2580 2.1047 -1.0700 20 1 3.9122 2.6640 -1.7831 21 1 -0.3633 -1.0237 -0.0897 22 1 -0.3634 0.4343 0.9313 23 1 -0.3634 0.5896 -0.8418 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 0.7535 3.7654 0.4565 27 1 1.3681 3.9166 2.1202 28 1 2.5033 3.9083 0.7493 29 1 9.0439 0.8655 0.1888 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158918014.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:45 Heat of formation + Delta-G solvation = 7.555475 kcal Electronic energy + Delta-G solvation = -13934.333403 eV Core-core repulsion = 11472.400581 eV Total energy + Delta-G solvation = -2461.932823 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.73869 -37.68908 -33.67560 -33.18349 -31.80554 -29.48877 -27.18323 -25.86003 -24.38596 -21.53302 -20.82561 -19.67120 -17.50364 -16.38521 -15.89317 -15.19035 -14.93402 -14.38528 -13.68631 -13.54514 -13.23100 -13.09806 -12.24731 -11.59930 -11.42491 -11.27032 -11.11667 -10.98522 -10.82252 -10.46034 -10.28665 -9.68789 -9.44394 -9.31873 -8.97280 -8.26656 -7.60433 -6.58828 -4.56450 2.95323 3.08744 3.13157 3.45804 3.90412 4.15030 4.46284 4.61771 5.22675 5.37767 5.43970 5.45870 5.53621 5.59229 5.71896 5.91537 5.98432 6.13967 6.20966 6.43596 6.67529 6.96188 7.08520 7.27600 7.49059 7.67323 8.23073 8.27650 8.78529 9.06207 10.34448 10.83031 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.059188 B = 0.007460 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.952444 B = 3752.450999 C = 3871.778133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C 0.202 3.798 4 H 0.054 0.946 5 O -0.372 6.372 6 C 0.034 3.966 7 C 0.027 3.973 8 N -0.272 5.272 9 N -0.339 5.339 10 C 0.337 3.663 11 C -0.457 4.457 12 H 0.082 0.918 13 C 0.079 3.921 14 N -0.738 5.738 15 Si 0.919 3.081 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.273 1.273 19 N -0.636 5.636 20 H 0.400 0.600 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 3.094 -3.272 10.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C 0.141 3.859 4 H 0.072 0.928 5 O -0.289 6.289 6 C -0.063 4.063 7 C -0.238 4.238 8 N -0.117 5.117 9 N -0.188 5.188 10 C 0.091 3.909 11 C -0.497 4.497 12 H 0.100 0.900 13 C -0.146 4.146 14 N -0.362 5.362 15 Si 0.743 3.257 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.198 1.198 19 N -0.256 5.256 20 H 0.235 0.765 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.531 1.877 -1.638 8.887 hybrid contribution 0.215 1.723 -2.148 2.762 sum -8.316 3.600 -3.787 9.821 Atomic orbital electron populations 1.21753 0.95806 1.01157 1.01766 1.21461 0.95057 0.94281 1.03738 1.19886 0.85519 0.94228 0.86242 0.92769 1.87972 1.88856 1.18523 1.33521 1.22675 0.99476 0.82337 1.01845 1.24096 0.95841 1.07084 0.96747 1.73986 0.97696 1.18004 1.21980 1.75645 1.08585 1.21538 1.12989 1.21651 0.81834 0.93651 0.93722 1.18193 0.88185 1.30060 1.13255 0.90006 1.25776 1.00041 0.93983 0.94775 1.69964 1.24016 1.23028 1.19164 0.86106 0.80481 0.79234 0.79898 1.18680 1.19822 1.19790 1.43917 1.07934 1.44911 1.28863 0.76542 0.92845 0.92145 0.93441 0.90919 0.89957 0.94742 0.90103 0.94201 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.76 37.16 0.36 -1.51 15 2 C -0.11 -1.76 5.60 -26.73 -0.15 -1.91 15 3 C 0.20 3.69 2.65 -27.88 -0.07 3.62 15 4 H 0.05 0.85 7.89 -51.93 -0.41 0.44 15 5 O -0.37 -6.88 9.99 -35.23 -0.35 -7.24 15 6 C 0.03 0.50 10.80 101.05 1.09 1.59 15 7 C 0.03 0.65 6.91 -154.50 -1.07 -0.42 15 8 N -0.27 -7.65 12.19 32.88 0.40 -7.25 15 9 N -0.34 -10.38 10.53 31.22 0.33 -10.05 15 10 C 0.34 9.41 7.73 -155.21 -1.20 8.21 15 11 C -0.46 -12.21 9.46 -38.12 -0.36 -12.57 15 12 H 0.08 1.98 7.85 -52.48 -0.41 1.57 15 13 C 0.08 2.06 5.50 -17.29 -0.10 1.96 15 14 N -0.74 -20.63 11.95 55.56 0.66 -19.97 15 15 Si 0.92 18.75 29.56 -169.99 -5.03 13.73 15 16 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 19 N -0.64 -14.86 6.29 -9.37 -0.06 -14.91 15 20 H 0.40 7.64 8.96 -40.82 -0.37 7.28 15 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 15 22 H 0.06 0.78 7.96 -51.93 -0.41 0.36 15 23 H 0.05 0.54 8.14 -51.92 -0.42 0.12 15 24 H 0.07 1.19 8.14 -51.93 -0.42 0.76 15 25 H 0.08 1.51 8.14 -51.93 -0.42 1.08 15 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 15 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.04 0.66 7.95 -51.93 -0.41 0.24 15 29 H 0.28 6.99 8.29 -40.82 -0.34 6.65 15 LS Contribution 257.99 15.07 3.89 3.89 Total: -1.00 -33.13 257.99 -5.33 -38.47 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -3.68 Total: 4.37 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.49 Total: -1.04 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 1.33 Total: -52.18 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.35 Total: -7.24 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.13 -5.33 -38.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158918014.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.021 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds