Wall clock time and date at job start Mon Mar 30 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 H 1.09004 * 109.47269 * 305.30231 * 3 2 1 5 5 O 1.42898 * 109.47244 * 65.30298 * 3 2 1 6 6 C 1.42900 * 114.00286 * 205.18502 * 5 3 2 7 7 C 1.50697 * 109.47328 * 185.30339 * 3 2 1 8 8 N 1.31316 * 126.08038 * 305.02496 * 7 3 2 9 9 N 1.28564 * 110.20852 * 179.97438 * 8 7 3 10 10 C 1.33022 * 109.35426 * 359.97438 * 9 8 7 11 11 C 1.40131 * 126.65485 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99961 * 180.02562 * 11 10 9 13 13 C 1.40243 * 119.99856 * 359.75160 * 11 10 9 14 14 N 1.30680 * 120.00068 * 0.27621 * 13 11 10 15 15 Si 1.86799 * 119.99853 * 180.27350 * 13 11 10 16 16 H 1.48501 * 109.47295 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47093 * 120.00048 * 15 13 11 18 18 H 1.48502 * 109.47031 * 240.00408 * 15 13 11 19 19 N 1.35302 * 126.07658 * 125.29468 * 7 3 2 20 20 H 0.96998 * 127.04822 * 0.02952 * 19 7 3 21 21 H 1.08997 * 109.47142 * 174.99100 * 1 2 3 22 22 H 1.08995 * 109.47319 * 294.99907 * 1 2 3 23 23 H 1.09009 * 109.47078 * 54.99600 * 1 2 3 24 24 H 1.09000 * 109.47555 * 240.00172 * 2 1 3 25 25 H 1.08996 * 109.47383 * 119.99605 * 2 1 3 26 26 H 1.09006 * 109.47112 * 64.97443 * 6 5 3 27 27 H 1.09003 * 109.47302 * 184.97449 * 6 5 3 28 28 H 1.08995 * 109.47331 * 304.97810 * 6 5 3 29 29 H 0.96997 * 120.00248 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6012 1.9831 -0.8387 5 8 1.6680 2.0793 1.2240 6 6 1.5673 3.5017 1.1320 7 6 3.5412 1.4446 -0.1313 8 7 4.3865 0.8101 0.6479 9 7 5.5936 1.0219 0.2593 10 6 5.5803 1.8165 -0.8075 11 6 6.6946 2.2770 -1.5215 12 1 6.5589 2.9225 -2.3767 13 6 7.9863 1.9045 -1.1221 14 7 8.1505 1.1235 -0.0873 15 14 9.4721 2.5246 -2.0693 16 1 9.0198 3.3873 -3.1903 17 1 10.3451 3.3111 -1.1613 18 1 10.2326 1.3690 -2.6092 19 7 4.2580 2.1047 -1.0700 20 1 3.9122 2.6640 -1.7831 21 1 -0.3633 -1.0237 -0.0897 22 1 -0.3634 0.4343 0.9313 23 1 -0.3634 0.5896 -0.8418 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 0.7535 3.7654 0.4565 27 1 1.3681 3.9166 2.1202 28 1 2.5033 3.9083 0.7493 29 1 9.0439 0.8655 0.1888 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158918014.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:45 Heat of formation + Delta-G solvation = -16.380759 kcal Electronic energy + Delta-G solvation = -13935.371356 eV Core-core repulsion = 11472.400581 eV Total energy + Delta-G solvation = -2462.970776 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.72017 -39.12725 -35.58469 -34.53811 -33.79962 -31.33912 -28.69459 -27.39732 -26.05911 -22.99353 -22.80996 -21.48031 -19.31910 -18.16294 -17.50746 -16.84049 -16.44148 -16.03296 -15.49927 -15.00822 -14.79478 -14.38822 -13.41795 -13.29656 -13.00022 -12.95103 -12.66960 -12.35298 -12.04115 -11.93616 -11.68515 -11.61071 -11.32105 -10.97831 -10.84164 -10.26829 -9.66201 -8.51204 -6.62366 1.27016 1.42511 1.60396 1.68485 2.19483 2.47623 2.60147 3.00482 3.38517 3.86493 3.91403 4.12836 4.42151 4.46469 4.51536 4.66160 4.78551 4.96194 4.98813 5.13747 5.22225 5.28938 5.33236 5.48361 5.52895 6.22504 6.23880 6.38409 6.79745 7.19131 8.45594 8.80306 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.059188 B = 0.007460 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.952444 B = 3752.450999 C = 3871.778133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.200 3.800 4 H 0.092 0.908 5 O -0.389 6.389 6 C 0.027 3.973 7 C 0.061 3.939 8 N -0.329 5.329 9 N -0.396 5.396 10 C 0.309 3.691 11 C -0.482 4.482 12 H 0.102 0.898 13 C 0.028 3.972 14 N -0.791 5.791 15 Si 1.007 2.993 16 H -0.246 1.246 17 H -0.269 1.269 18 H -0.268 1.268 19 N -0.625 5.625 20 H 0.420 0.580 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.018 0.982 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.417 4.417 -4.966 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.140 3.860 4 H 0.110 0.890 5 O -0.306 6.306 6 C -0.069 4.069 7 C -0.208 4.208 8 N -0.171 5.171 9 N -0.243 5.243 10 C 0.062 3.938 11 C -0.522 4.522 12 H 0.120 0.880 13 C -0.192 4.192 14 N -0.416 5.416 15 Si 0.826 3.174 16 H -0.169 1.169 17 H -0.194 1.194 18 H -0.192 1.192 19 N -0.246 5.246 20 H 0.259 0.741 21 H 0.088 0.912 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.037 0.963 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.817 3.206 -3.327 10.850 hybrid contribution 0.434 1.341 -1.589 2.124 sum -9.383 4.547 -4.916 11.527 Atomic orbital electron populations 1.21672 0.92323 1.02743 1.02617 1.21461 0.97989 0.92728 1.02314 1.20253 0.81996 0.96076 0.87711 0.88994 1.87959 1.88436 1.20541 1.33680 1.22918 0.99743 0.80362 1.03879 1.25219 0.97944 1.03335 0.94315 1.73886 0.97932 1.20920 1.24388 1.75523 1.10112 1.23696 1.14938 1.22037 0.83707 0.94140 0.93901 1.18742 0.88662 1.30762 1.14012 0.87971 1.26984 1.03366 0.93438 0.95402 1.70115 1.25223 1.24839 1.21425 0.84800 0.75432 0.78717 0.78417 1.16922 1.19364 1.19242 1.43865 1.06715 1.44723 1.29296 0.74121 0.91216 0.92250 0.91315 0.91145 0.92741 0.91042 0.88434 0.96283 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.76 71.98 0.70 -2.34 15 2 C -0.11 -3.36 5.60 30.59 0.17 -3.19 15 3 C 0.20 6.95 2.65 29.85 0.08 7.03 15 4 H 0.09 2.52 7.89 -2.39 -0.02 2.50 15 5 O -0.39 -13.70 9.99 -148.98 -1.49 -15.19 15 6 C 0.03 0.74 10.80 113.37 1.22 1.97 15 7 C 0.06 2.85 6.91 137.81 0.95 3.80 15 8 N -0.33 -19.13 12.19 -49.87 -0.61 -19.73 15 9 N -0.40 -25.17 10.53 -55.14 -0.58 -25.75 15 10 C 0.31 17.65 7.73 133.51 1.03 18.68 15 11 C -0.48 -25.91 9.46 23.22 0.22 -25.69 15 12 H 0.10 4.85 7.85 -2.91 -0.02 4.83 15 13 C 0.03 1.48 5.50 85.35 0.47 1.95 15 14 N -0.79 -45.67 11.95 21.88 0.26 -45.41 15 15 Si 1.01 38.20 29.56 68.60 2.03 40.23 15 16 H -0.25 -8.57 7.11 99.48 0.71 -7.86 15 17 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 18 H -0.27 -9.83 7.11 99.48 0.71 -9.13 15 19 N -0.62 -28.93 6.29 -183.57 -1.15 -30.09 15 20 H 0.42 15.40 8.96 -92.71 -0.83 14.57 15 21 H 0.07 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.06 1.35 7.96 -2.39 -0.02 1.33 15 23 H 0.07 1.26 8.14 -2.38 -0.02 1.24 15 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.07 1.44 8.14 -2.38 -0.02 1.42 15 27 H 0.10 2.32 8.14 -2.39 -0.02 2.30 15 28 H 0.02 0.59 7.95 -2.39 -0.02 0.57 15 29 H 0.28 14.75 8.29 -92.71 -0.77 13.98 15 Total: -1.00 -75.30 257.99 3.63 -71.67 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.32 Total: 22.07 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 4.85 Total: 2.20 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -2.08 Total: -120.98 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -1.49 Total: -15.19 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -75.30 3.63 -71.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158918014.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.286 kcal (2) G-P(sol) polarization free energy of solvation -75.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds