Wall clock time and date at job start Mon Mar 30 2020 03:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47402 * 2 1 4 4 F 1.39906 * 109.46960 * 239.99809 * 2 1 3 5 5 C 1.52998 * 109.46732 * 120.00405 * 2 1 3 6 6 N 1.46498 * 109.47472 * 59.99875 * 5 2 1 7 7 C 1.36647 * 124.79246 * 90.02284 * 6 5 2 8 8 C 1.34323 * 109.39173 * 179.97438 * 7 6 5 9 9 C 1.46976 * 106.48831 * 359.97438 * 8 7 6 10 10 C 1.41342 * 127.11393 * 179.73690 * 9 8 7 11 11 H 1.08000 * 120.00270 * 180.02562 * 10 9 8 12 12 C 1.39678 * 119.99996 * 0.02562 * 10 9 8 13 13 N 1.31052 * 120.00083 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00063 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47001 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46992 * 120.00025 * 14 12 10 17 17 H 1.48506 * 109.47250 * 240.00360 * 14 12 10 18 18 C 1.34920 * 124.78936 * 269.98132 * 6 5 2 19 19 H 1.09000 * 109.46906 * 300.00184 * 1 2 3 20 20 H 1.09003 * 109.46993 * 59.99331 * 1 2 3 21 21 H 1.08996 * 109.47934 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46861 * 180.02562 * 3 2 1 23 23 H 1.08999 * 109.47099 * 299.99740 * 3 2 1 24 24 H 1.08996 * 109.46746 * 60.00018 * 3 2 1 25 25 H 1.09004 * 109.47384 * 299.99232 * 5 2 1 26 26 H 1.09006 * 109.47195 * 180.02562 * 5 2 1 27 27 H 1.07999 * 125.30333 * 359.94710 * 7 6 5 28 28 H 1.08001 * 126.75807 * 180.02562 * 8 7 6 29 29 H 0.97000 * 120.00226 * 180.02562 * 13 12 10 30 30 H 1.07994 * 126.03399 * 0.03867 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0398 -0.7213 1.2492 6 7 1.5515 -2.1025 1.2492 7 6 2.2080 -3.1617 0.6885 8 6 1.4853 -4.2797 0.8672 9 6 0.2763 -3.8818 1.6022 10 6 -0.7857 -4.7188 2.0138 11 1 -1.6246 -4.3020 2.5512 12 6 -0.7502 -6.0850 1.7255 13 7 0.2680 -6.5910 1.0739 14 14 -2.1534 -7.1913 2.2701 15 1 -3.1739 -6.3817 2.9832 16 1 -2.7714 -7.8290 1.0799 17 1 -1.6307 -8.2425 3.1796 18 6 0.3903 -2.5085 1.8035 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3635 -1.0276 -0.0005 22 1 3.1300 1.4424 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9562 0.8900 25 1 1.6766 -0.2075 2.1393 26 1 3.1299 -0.7210 1.2495 27 1 3.1596 -3.1081 0.1804 28 1 1.7423 -5.2752 0.5366 29 1 0.2925 -7.5397 0.8733 30 1 -0.3244 -1.8795 2.3132 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212867807.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:48 Heat of formation + Delta-G solvation = -12.414874 kcal Electronic energy + Delta-G solvation = -13996.003943 eV Core-core repulsion = 11513.285180 eV Total energy + Delta-G solvation = -2482.718764 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.27809 -39.08537 -34.83716 -33.11235 -30.07857 -27.91887 -27.28028 -25.90205 -23.76564 -20.24532 -19.07764 -18.34823 -16.83060 -15.76532 -15.53761 -15.11488 -14.74357 -14.17757 -12.94761 -12.76308 -12.68000 -12.32637 -12.12010 -12.11849 -11.66309 -11.48872 -11.30188 -11.08942 -10.84168 -10.63267 -10.51240 -10.35583 -9.76318 -9.20745 -9.07111 -6.88613 -6.60449 -6.21313 -3.80503 3.15716 3.28245 3.33358 3.77268 4.21961 4.30694 4.58823 4.73988 4.78506 4.96190 5.05871 5.39346 5.56942 5.72681 5.78870 5.86234 5.89758 6.03077 6.30405 6.38228 6.56625 6.74044 7.48512 7.56747 7.83242 8.09595 8.47257 8.64565 9.07845 9.11693 9.44011 9.46129 10.74535 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.061419 B = 0.007668 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.777214 B = 3650.771533 C = 3822.185610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 C -0.170 4.170 4 F -0.205 7.205 5 C 0.101 3.899 6 N -0.458 5.458 7 C -0.047 4.047 8 C -0.195 4.195 9 C 0.040 3.960 10 C -0.442 4.442 11 H 0.064 0.936 12 C 0.068 3.932 13 N -0.829 5.829 14 Si 0.905 3.095 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.185 4.185 19 H 0.067 0.933 20 H 0.058 0.942 21 H 0.089 0.911 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.126 0.874 28 H 0.152 0.848 29 H 0.267 0.733 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 11.032 -0.902 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.078 3.922 3 C -0.228 4.228 4 F -0.186 7.186 5 C -0.025 4.025 6 N -0.141 5.141 7 C -0.173 4.173 8 C -0.223 4.223 9 C 0.034 3.966 10 C -0.476 4.476 11 H 0.082 0.918 12 C -0.143 4.143 13 N -0.460 5.460 14 Si 0.732 3.268 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.307 4.307 19 H 0.086 0.914 20 H 0.077 0.923 21 H 0.108 0.892 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.144 0.856 28 H 0.169 0.831 29 H 0.077 0.923 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.574 11.107 -0.982 11.444 hybrid contribution -0.584 -0.493 0.131 0.775 sum 1.990 10.614 -0.851 10.832 Atomic orbital electron populations 1.22382 0.93270 1.05346 1.02078 1.21423 0.95738 0.91350 0.83700 1.22335 1.02116 0.94974 1.03350 1.92858 1.90159 1.82969 1.52603 1.21964 0.99553 0.84132 0.96805 1.42647 1.18729 1.03890 1.48838 1.21371 0.99769 0.87809 1.08333 1.22672 0.96286 0.97138 1.06181 1.18499 0.93457 0.89545 0.95149 1.18749 1.04214 0.91784 1.32825 0.91759 1.25671 0.96080 0.98596 0.93978 1.69803 1.28822 1.13167 1.34208 0.86320 0.81751 0.80046 0.78687 1.19126 1.20513 1.20509 1.21331 0.93780 0.95847 1.19792 0.91392 0.92305 0.89249 0.91598 0.91436 0.90785 0.89559 0.90381 0.85619 0.83058 0.92263 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 8.45 37.16 0.31 -2.36 16 2 C 0.10 1.49 1.46 -90.62 -0.13 1.36 16 3 C -0.17 -1.86 8.93 37.16 0.33 -1.53 16 4 F -0.21 -3.83 16.49 2.25 0.04 -3.79 16 5 C 0.10 1.66 5.27 -4.04 -0.02 1.64 16 6 N -0.46 -10.11 2.39 -116.29 -0.28 -10.39 16 7 C -0.05 -1.13 11.05 -16.79 -0.19 -1.31 16 8 C -0.19 -5.38 9.88 -37.43 -0.37 -5.75 16 9 C 0.04 1.14 6.10 -104.79 -0.64 0.50 16 10 C -0.44 -12.75 9.40 -37.86 -0.36 -13.11 16 11 H 0.06 1.79 7.84 -52.49 -0.41 1.38 16 12 C 0.07 1.87 5.49 -17.35 -0.10 1.78 16 13 N -0.83 -23.39 10.42 55.54 0.58 -22.81 16 14 Si 0.91 20.58 29.56 -169.99 -5.02 15.56 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 C -0.18 -4.56 9.50 -15.81 -0.15 -4.71 16 19 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.09 1.73 6.36 -51.93 -0.33 1.40 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.24 8.13 -51.93 -0.42 0.82 16 26 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 27 H 0.13 2.70 8.06 -52.49 -0.42 2.27 16 28 H 0.15 4.36 6.03 -52.49 -0.32 4.05 16 29 H 0.27 6.92 8.30 -40.82 -0.34 6.59 16 30 H 0.13 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 257.32 15.07 3.88 3.88 Total: -1.00 -30.88 257.32 -6.11 -36.99 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.00 Total: 4.07 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -1.30 Total: -23.50 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.30 Total: -33.20 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.04 Total: -3.79 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.88 -6.11 -36.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212867807.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.576 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds