Wall clock time and date at job start Mon Mar 30 2020 03:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47402 * 2 1 4 4 F 1.39906 * 109.46960 * 239.99809 * 2 1 3 5 5 C 1.52998 * 109.46732 * 120.00405 * 2 1 3 6 6 N 1.46498 * 109.47472 * 59.99875 * 5 2 1 7 7 C 1.36647 * 124.79246 * 90.02284 * 6 5 2 8 8 C 1.34323 * 109.39173 * 179.97438 * 7 6 5 9 9 C 1.46976 * 106.48831 * 359.97438 * 8 7 6 10 10 C 1.41342 * 127.11393 * 179.73690 * 9 8 7 11 11 H 1.08000 * 120.00270 * 180.02562 * 10 9 8 12 12 C 1.39678 * 119.99996 * 0.02562 * 10 9 8 13 13 N 1.31052 * 120.00083 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00063 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47001 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46992 * 120.00025 * 14 12 10 17 17 H 1.48506 * 109.47250 * 240.00360 * 14 12 10 18 18 C 1.34920 * 124.78936 * 269.98132 * 6 5 2 19 19 H 1.09000 * 109.46906 * 300.00184 * 1 2 3 20 20 H 1.09003 * 109.46993 * 59.99331 * 1 2 3 21 21 H 1.08996 * 109.47934 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46861 * 180.02562 * 3 2 1 23 23 H 1.08999 * 109.47099 * 299.99740 * 3 2 1 24 24 H 1.08996 * 109.46746 * 60.00018 * 3 2 1 25 25 H 1.09004 * 109.47384 * 299.99232 * 5 2 1 26 26 H 1.09006 * 109.47195 * 180.02562 * 5 2 1 27 27 H 1.07999 * 125.30333 * 359.94710 * 7 6 5 28 28 H 1.08001 * 126.75807 * 180.02562 * 8 7 6 29 29 H 0.97000 * 120.00226 * 180.02562 * 13 12 10 30 30 H 1.07994 * 126.03399 * 0.03867 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0398 -0.7213 1.2492 6 7 1.5515 -2.1025 1.2492 7 6 2.2080 -3.1617 0.6885 8 6 1.4853 -4.2797 0.8672 9 6 0.2763 -3.8818 1.6022 10 6 -0.7857 -4.7188 2.0138 11 1 -1.6246 -4.3020 2.5512 12 6 -0.7502 -6.0850 1.7255 13 7 0.2680 -6.5910 1.0739 14 14 -2.1534 -7.1913 2.2701 15 1 -3.1739 -6.3817 2.9832 16 1 -2.7714 -7.8290 1.0799 17 1 -1.6307 -8.2425 3.1796 18 6 0.3903 -2.5085 1.8035 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3635 -1.0276 -0.0005 22 1 3.1300 1.4424 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9562 0.8900 25 1 1.6766 -0.2075 2.1393 26 1 3.1299 -0.7210 1.2495 27 1 3.1596 -3.1081 0.1804 28 1 1.7423 -5.2752 0.5366 29 1 0.2925 -7.5397 0.8733 30 1 -0.3244 -1.8795 2.3132 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212867807.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:48 Heat of formation + Delta-G solvation = -29.905503 kcal Electronic energy + Delta-G solvation = -13996.762394 eV Core-core repulsion = 11513.285180 eV Total energy + Delta-G solvation = -2483.477214 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.61302 -40.94852 -36.24762 -34.99994 -31.78591 -29.82712 -28.48003 -27.57465 -25.56058 -21.52706 -21.08126 -20.20694 -18.74214 -17.35421 -16.89378 -16.65425 -16.39409 -15.69305 -14.51001 -14.40874 -14.22478 -13.69543 -13.50823 -13.35788 -13.15844 -12.92943 -12.89006 -12.79860 -12.62001 -12.56592 -11.88654 -11.70852 -11.57554 -11.28084 -11.04406 -8.88972 -8.57361 -8.23769 -5.90941 1.35724 1.41784 1.56670 1.90359 2.35384 2.54002 2.64425 3.55597 3.61868 3.72278 3.76359 3.88988 4.31681 4.51022 4.53807 4.65992 4.77682 4.80738 4.81858 5.14580 5.20053 5.30421 5.41418 5.52040 5.84363 6.05255 6.38225 6.60875 7.03773 7.20682 7.35429 7.43774 8.73320 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.061419 B = 0.007668 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.777214 B = 3650.771533 C = 3822.185610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 C -0.160 4.160 4 F -0.229 7.229 5 C 0.088 3.912 6 N -0.447 5.447 7 C -0.036 4.036 8 C -0.241 4.241 9 C -0.016 4.016 10 C -0.480 4.480 11 H 0.061 0.939 12 C 0.016 3.984 13 N -0.862 5.862 14 Si 0.982 3.018 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.271 1.271 18 C -0.163 4.163 19 H 0.092 0.908 20 H 0.072 0.928 21 H 0.042 0.958 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.153 0.847 28 H 0.128 0.872 29 H 0.271 0.729 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 13.272 -0.339 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.073 3.927 3 C -0.217 4.217 4 F -0.210 7.210 5 C -0.034 4.034 6 N -0.127 5.127 7 C -0.165 4.165 8 C -0.270 4.270 9 C -0.023 4.023 10 C -0.514 4.514 11 H 0.080 0.920 12 C -0.191 4.191 13 N -0.494 5.494 14 Si 0.804 3.196 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.196 1.196 18 C -0.288 4.288 19 H 0.111 0.889 20 H 0.091 0.909 21 H 0.062 0.938 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.135 0.865 26 H 0.118 0.882 27 H 0.170 0.830 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.621 13.399 -0.420 13.660 hybrid contribution -0.520 -1.008 -0.065 1.136 sum 2.100 12.392 -0.485 12.578 Atomic orbital electron populations 1.22371 0.93656 1.02845 1.04127 1.21678 0.95546 0.93585 0.81934 1.22286 1.02832 0.91481 1.05129 1.92822 1.90397 1.83798 1.53934 1.22486 1.01066 0.80924 0.98961 1.42911 1.17338 1.06032 1.46391 1.21573 1.00126 0.87484 1.07310 1.22545 0.97809 0.97631 1.08982 1.18956 0.94395 0.91574 0.97359 1.19049 1.04821 0.93189 1.34322 0.92030 1.26576 0.98895 0.99783 0.93894 1.69947 1.30627 1.13631 1.35171 0.85165 0.78207 0.77793 0.78394 1.18491 1.19792 1.19619 1.21550 0.94401 0.94898 1.17966 0.88870 0.90921 0.93837 0.90474 0.90595 0.88153 0.86548 0.88235 0.82961 0.85418 0.91909 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.89 8.45 71.98 0.61 -4.28 16 2 C 0.09 2.50 1.46 -10.80 -0.02 2.48 16 3 C -0.16 -2.74 8.93 71.98 0.64 -2.10 16 4 F -0.23 -8.10 16.49 44.97 0.74 -7.36 16 5 C 0.09 2.60 5.27 86.38 0.46 3.05 16 6 N -0.45 -19.09 2.39 -521.83 -1.25 -20.34 16 7 C -0.04 -1.74 11.05 83.05 0.92 -0.83 16 8 C -0.24 -13.88 9.88 23.67 0.23 -13.65 16 9 C -0.02 -0.96 6.10 -19.98 -0.12 -1.09 16 10 C -0.48 -28.72 9.40 23.38 0.22 -28.50 16 11 H 0.06 3.54 7.84 -2.91 -0.02 3.51 16 12 C 0.02 0.91 5.49 85.16 0.47 1.38 16 13 N -0.86 -50.77 10.42 21.79 0.23 -50.54 16 14 Si 0.98 43.28 29.56 68.60 2.03 45.30 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 C -0.16 -8.00 9.50 84.47 0.80 -7.20 16 19 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 20 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.04 1.64 6.36 -2.39 -0.02 1.62 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.12 2.78 8.13 -2.38 -0.02 2.76 16 26 H 0.10 2.57 8.13 -2.38 -0.02 2.55 16 27 H 0.15 6.38 8.06 -2.91 -0.02 6.35 16 28 H 0.13 7.83 6.03 -2.91 -0.02 7.82 16 29 H 0.27 14.62 8.30 -92.71 -0.77 13.85 16 30 H 0.15 6.46 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -70.36 257.32 7.07 -63.28 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 1.11 Total: 20.37 kcal Atomic # 6 Polarization: -54.93 SS G_CDS: 4.21 Total: -50.72 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.02 Total: -70.88 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.74 Total: -7.36 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.36 7.07 -63.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212867807.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.379 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds