Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46353 * 2 1 4 4 F 1.39898 * 109.47106 * 240.00604 * 2 1 3 5 5 C 1.52998 * 109.47294 * 119.99963 * 2 1 3 6 6 C 1.53003 * 109.46903 * 185.00384 * 5 2 1 7 7 N 1.46503 * 109.46917 * 180.02562 * 6 5 2 8 8 C 1.36166 * 125.73992 * 265.15470 * 7 6 5 9 9 C 1.35979 * 109.04788 * 180.30331 * 8 7 6 10 10 C 1.39300 * 108.09146 * 359.72854 * 9 8 7 11 11 C 1.38020 * 125.74722 * 84.99732 * 7 6 5 12 12 C 1.39950 * 126.35181 * 359.96512 * 11 7 6 13 13 H 1.08002 * 120.00251 * 18.20221 * 12 11 7 14 14 C 1.40069 * 120.00299 * 198.19857 * 12 11 7 15 15 N 1.30862 * 119.99556 * 23.33778 * 14 12 11 16 16 Si 1.86800 * 120.00207 * 203.33918 * 14 12 11 17 17 H 1.48493 * 109.47118 * 179.97438 * 16 14 12 18 18 H 1.48504 * 109.47081 * 299.99820 * 16 14 12 19 19 H 1.48500 * 109.46975 * 59.99857 * 16 14 12 20 20 H 1.09003 * 109.47113 * 299.99547 * 1 2 3 21 21 H 1.09002 * 109.47563 * 60.00270 * 1 2 3 22 22 H 1.09005 * 109.46832 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47074 * 65.00107 * 5 2 1 24 24 H 1.09002 * 109.47048 * 305.00346 * 5 2 1 25 25 H 1.08999 * 109.46994 * 60.00096 * 6 5 2 26 26 H 1.08997 * 109.46791 * 299.99799 * 6 5 2 27 27 H 1.07995 * 125.48011 * 0.03737 * 8 7 6 28 28 H 1.07998 * 125.95376 * 179.71331 * 9 8 7 29 29 H 1.07991 * 126.47332 * 180.02562 * 10 9 8 30 30 H 0.96997 * 120.00144 * 5.88984 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 3.5649 -0.6131 1.3136 7 7 4.0533 -1.3043 2.5095 8 6 4.3156 -0.7231 3.7126 9 6 4.7573 -1.6743 4.5781 10 6 4.7706 -2.8957 3.9085 11 6 4.3222 -2.6545 2.6071 12 6 4.1782 -3.6047 1.5898 13 1 4.1158 -3.2874 0.5593 14 6 4.1150 -4.9673 1.9080 15 7 3.7354 -5.3433 3.1026 16 14 4.5724 -6.2477 0.6271 17 1 4.4233 -7.6056 1.2094 18 1 3.6772 -6.1123 -0.5500 19 1 5.9811 -6.0431 0.2038 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.7517 -1.7715 1.2056 24 1 1.6054 -0.2617 2.1369 25 1 3.8531 0.4372 1.3573 26 1 3.9995 -1.0726 0.4259 27 1 4.1965 0.3256 3.9414 28 1 5.0475 -1.5112 5.6055 29 1 5.0704 -3.8490 4.3178 30 1 3.4165 -4.6851 3.7397 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212868229.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = -31.796031 kcal Electronic energy + Delta-G solvation = -13934.181881 eV Core-core repulsion = 11450.622688 eV Total energy + Delta-G solvation = -2483.559194 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.42819 -39.28975 -34.60657 -33.50485 -31.24606 -28.06061 -27.50711 -24.18724 -23.21984 -21.07598 -19.22238 -18.88029 -17.24339 -16.43830 -15.37687 -15.05450 -14.61769 -14.02467 -13.54552 -13.19034 -12.75013 -12.46264 -12.32175 -12.26147 -11.90456 -11.42385 -11.00601 -10.88280 -10.59225 -10.56311 -10.44825 -10.32317 -10.23318 -9.44762 -8.84974 -7.27161 -6.90301 -6.83704 -4.09781 3.20151 3.28806 3.48327 3.76819 4.13560 4.31113 4.49139 4.75890 4.84076 4.90178 5.10709 5.35645 5.38026 5.66592 5.72042 5.76058 5.99656 6.02954 6.34761 6.37136 6.53929 6.81072 7.17031 7.65650 7.68873 7.96548 8.07631 8.38428 8.63297 8.92016 9.15829 9.36720 10.39078 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.011681 C = 0.008517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.613462 B = 2396.447684 C = 3286.629774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.092 3.908 3 H 0.079 0.921 4 F -0.213 7.213 5 C -0.161 4.161 6 C 0.128 3.872 7 N -0.482 5.482 8 C -0.136 4.136 9 C -0.161 4.161 10 C -0.347 4.347 11 C 0.229 3.771 12 C -0.538 4.538 13 H 0.066 0.934 14 C 0.048 3.952 15 N -0.816 5.816 16 Si 1.068 2.932 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.278 1.278 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 7.711 -5.231 10.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.055 3.945 3 H 0.097 0.903 4 F -0.195 7.195 5 C -0.199 4.199 6 C 0.004 3.996 7 N -0.166 5.166 8 C -0.258 4.258 9 C -0.187 4.187 10 C -0.370 4.370 11 C 0.120 3.880 12 C -0.572 4.572 13 H 0.084 0.916 14 C -0.174 4.174 15 N -0.442 5.442 16 Si 0.892 3.108 17 H -0.201 1.201 18 H -0.205 1.205 19 H -0.203 1.203 20 H 0.091 0.909 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.106 0.894 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.142 0.858 28 H 0.120 0.880 29 H 0.132 0.868 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.616 6.277 -5.646 9.622 hybrid contribution -0.180 1.816 0.315 1.851 sum -4.796 8.092 -5.330 10.812 Atomic orbital electron populations 1.22360 0.94526 1.03738 1.02923 1.21511 0.94650 0.95849 0.82493 0.90330 1.92821 1.90264 1.83463 1.52904 1.22592 0.97324 1.03290 0.96742 1.21218 0.93019 0.96318 0.88997 1.43958 1.56045 1.08091 1.08548 1.20909 1.21241 0.96858 0.86820 1.20281 1.07057 0.94123 0.97203 1.20758 1.23235 0.97148 0.95822 1.18179 0.94724 0.80602 0.94518 1.19340 1.51782 0.92428 0.93648 0.91571 1.26657 0.92501 0.98484 0.99719 1.70375 1.26271 1.41246 1.06291 0.83611 0.77451 0.75298 0.74411 1.20082 1.20531 1.20338 0.90852 0.91710 0.91232 0.89425 0.90304 0.91662 0.90300 0.85806 0.88041 0.86797 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.65 37.16 0.36 -1.66 16 2 C 0.09 1.26 3.96 -26.73 -0.11 1.16 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 F -0.21 -3.55 16.76 2.25 0.04 -3.51 16 5 C -0.16 -2.74 5.31 -26.73 -0.14 -2.88 16 6 C 0.13 2.50 5.77 -4.04 -0.02 2.48 16 7 N -0.48 -11.69 2.79 -114.07 -0.32 -12.00 16 8 C -0.14 -3.21 11.41 -16.44 -0.19 -3.40 16 9 C -0.16 -4.06 10.80 -40.00 -0.43 -4.49 16 10 C -0.35 -9.76 8.86 -38.63 -0.34 -10.10 16 11 C 0.23 6.38 6.33 -83.88 -0.53 5.85 16 12 C -0.54 -14.97 8.89 -38.25 -0.34 -15.31 16 13 H 0.07 1.80 7.35 -52.49 -0.39 1.41 16 14 C 0.05 1.29 5.27 -17.28 -0.09 1.19 16 15 N -0.82 -23.16 12.61 55.56 0.70 -22.46 16 16 Si 1.07 23.10 29.99 -169.99 -5.10 18.00 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 20 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 26 H 0.08 1.62 7.27 -51.93 -0.38 1.24 16 27 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 28 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.11 3.32 6.83 -52.49 -0.36 2.96 16 30 H 0.30 8.84 6.21 -40.82 -0.25 8.59 16 LS Contribution 260.48 15.07 3.93 3.93 Total: -1.00 -30.52 260.48 -6.56 -37.08 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -3.98 Total: 6.14 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -1.84 Total: -27.17 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.38 Total: -34.46 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.04 Total: -3.51 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.10 Total: 18.00 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.52 -6.56 -37.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212868229.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.288 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds