Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46353 * 2 1 4 4 F 1.39898 * 109.47106 * 240.00604 * 2 1 3 5 5 C 1.52998 * 109.47294 * 119.99963 * 2 1 3 6 6 C 1.53003 * 109.46903 * 185.00384 * 5 2 1 7 7 N 1.46503 * 109.46917 * 180.02562 * 6 5 2 8 8 C 1.36166 * 125.73992 * 265.15470 * 7 6 5 9 9 C 1.35979 * 109.04788 * 180.30331 * 8 7 6 10 10 C 1.39300 * 108.09146 * 359.72854 * 9 8 7 11 11 C 1.38020 * 125.74722 * 84.99732 * 7 6 5 12 12 C 1.39950 * 126.35181 * 359.96512 * 11 7 6 13 13 H 1.08002 * 120.00251 * 18.20221 * 12 11 7 14 14 C 1.40069 * 120.00299 * 198.19857 * 12 11 7 15 15 N 1.30862 * 119.99556 * 23.33778 * 14 12 11 16 16 Si 1.86800 * 120.00207 * 203.33918 * 14 12 11 17 17 H 1.48493 * 109.47118 * 179.97438 * 16 14 12 18 18 H 1.48504 * 109.47081 * 299.99820 * 16 14 12 19 19 H 1.48500 * 109.46975 * 59.99857 * 16 14 12 20 20 H 1.09003 * 109.47113 * 299.99547 * 1 2 3 21 21 H 1.09002 * 109.47563 * 60.00270 * 1 2 3 22 22 H 1.09005 * 109.46832 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47074 * 65.00107 * 5 2 1 24 24 H 1.09002 * 109.47048 * 305.00346 * 5 2 1 25 25 H 1.08999 * 109.46994 * 60.00096 * 6 5 2 26 26 H 1.08997 * 109.46791 * 299.99799 * 6 5 2 27 27 H 1.07995 * 125.48011 * 0.03737 * 8 7 6 28 28 H 1.07998 * 125.95376 * 179.71331 * 9 8 7 29 29 H 1.07991 * 126.47332 * 180.02562 * 10 9 8 30 30 H 0.96997 * 120.00144 * 5.88984 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 3.5649 -0.6131 1.3136 7 7 4.0533 -1.3043 2.5095 8 6 4.3156 -0.7231 3.7126 9 6 4.7573 -1.6743 4.5781 10 6 4.7706 -2.8957 3.9085 11 6 4.3222 -2.6545 2.6071 12 6 4.1782 -3.6047 1.5898 13 1 4.1158 -3.2874 0.5593 14 6 4.1150 -4.9673 1.9080 15 7 3.7354 -5.3433 3.1026 16 14 4.5724 -6.2477 0.6271 17 1 4.4233 -7.6056 1.2094 18 1 3.6772 -6.1123 -0.5500 19 1 5.9811 -6.0431 0.2038 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.7517 -1.7715 1.2056 24 1 1.6054 -0.2617 2.1369 25 1 3.8531 0.4372 1.3573 26 1 3.9995 -1.0726 0.4259 27 1 4.1965 0.3256 3.9414 28 1 5.0475 -1.5112 5.6055 29 1 5.0704 -3.8490 4.3178 30 1 3.4165 -4.6851 3.7397 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212868229.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = -48.631355 kcal Electronic energy + Delta-G solvation = -13934.911916 eV Core-core repulsion = 11450.622688 eV Total energy + Delta-G solvation = -2484.289228 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.63878 -41.23822 -36.09797 -35.45289 -32.72083 -30.02534 -29.10145 -26.24754 -24.67075 -22.30011 -21.25853 -20.80531 -19.16059 -17.61975 -17.14782 -16.41462 -15.94530 -15.78818 -15.15104 -14.97801 -14.54565 -14.03625 -13.81697 -13.65546 -13.13903 -13.01874 -12.72568 -12.68197 -12.41588 -12.05910 -11.94959 -11.81548 -11.66951 -11.45885 -10.86216 -9.28122 -8.98859 -8.91844 -6.22379 1.40558 1.51071 1.79957 1.90046 2.34366 2.45610 2.56151 3.25249 3.60187 3.70585 3.76775 3.90012 4.13711 4.32815 4.41657 4.57827 4.63320 4.79967 4.91118 5.04669 5.11947 5.14281 5.20787 5.52885 5.63918 5.86825 5.96469 6.26896 6.59276 6.88640 7.15562 7.35305 8.23232 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.011681 C = 0.008517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.613462 B = 2396.447684 C = 3286.629774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 H 0.115 0.885 4 F -0.233 7.233 5 C -0.151 4.151 6 C 0.119 3.881 7 N -0.484 5.484 8 C -0.107 4.107 9 C -0.190 4.190 10 C -0.375 4.375 11 C 0.196 3.804 12 C -0.561 4.561 13 H 0.063 0.937 14 C 0.005 3.995 15 N -0.839 5.839 16 Si 1.119 2.881 17 H -0.272 1.272 18 H -0.260 1.260 19 H -0.266 1.266 20 H 0.093 0.907 21 H 0.084 0.916 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.172 0.828 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.201 9.840 -6.197 12.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.055 3.945 3 H 0.133 0.867 4 F -0.214 7.214 5 C -0.190 4.190 6 C -0.003 4.003 7 N -0.167 5.167 8 C -0.230 4.230 9 C -0.215 4.215 10 C -0.398 4.398 11 C 0.085 3.915 12 C -0.596 4.596 13 H 0.081 0.919 14 C -0.209 4.209 15 N -0.465 5.465 16 Si 0.937 3.063 17 H -0.196 1.196 18 H -0.184 1.184 19 H -0.191 1.191 20 H 0.112 0.888 21 H 0.103 0.897 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.080 0.920 27 H 0.189 0.811 28 H 0.142 0.858 29 H 0.106 0.894 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.125 8.438 -6.629 11.892 hybrid contribution -0.032 1.323 0.684 1.490 sum -5.157 9.761 -5.945 12.539 Atomic orbital electron populations 1.22355 0.92541 1.03375 1.04922 1.21735 0.96230 0.96584 0.79920 0.86716 1.92789 1.90657 1.84091 1.53848 1.22484 0.95606 1.01457 0.99425 1.21575 0.94455 0.97727 0.86503 1.44284 1.55008 1.07190 1.10218 1.21637 1.17122 0.98518 0.85762 1.20590 1.08677 0.93389 0.98846 1.20802 1.24557 0.97459 0.96991 1.18366 0.95902 0.82568 0.94628 1.19529 1.53114 0.93352 0.93567 0.91910 1.28223 0.91238 1.00678 1.00804 1.70494 1.28520 1.40458 1.07056 0.82987 0.78048 0.72798 0.72495 1.19630 1.18412 1.19136 0.88847 0.89747 0.92830 0.93566 0.88901 0.87552 0.91975 0.81102 0.85780 0.89406 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.46 9.65 71.98 0.69 -2.76 16 2 C 0.09 2.27 3.96 30.59 0.12 2.39 16 3 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 4 F -0.23 -7.40 16.76 44.97 0.75 -6.65 16 5 C -0.15 -4.90 5.31 30.59 0.16 -4.74 16 6 C 0.12 4.41 5.77 86.38 0.50 4.91 16 7 N -0.48 -22.94 2.79 -514.80 -1.44 -24.38 16 8 C -0.11 -4.77 11.41 83.50 0.95 -3.82 16 9 C -0.19 -9.44 10.80 22.00 0.24 -9.20 16 10 C -0.38 -21.76 8.86 22.89 0.20 -21.56 16 11 C 0.20 11.16 6.33 38.95 0.25 11.41 16 12 C -0.56 -32.25 8.89 23.13 0.21 -32.04 16 13 H 0.06 3.52 7.35 -2.91 -0.02 3.50 16 14 C 0.01 0.29 5.27 85.28 0.45 0.74 16 15 N -0.84 -49.66 12.61 21.86 0.28 -49.38 16 16 Si 1.12 47.11 29.99 68.60 2.06 49.17 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 25 H 0.11 3.07 8.13 -2.39 -0.02 3.05 16 26 H 0.06 2.51 7.27 -2.39 -0.02 2.49 16 27 H 0.17 5.95 8.06 -2.91 -0.02 5.93 16 28 H 0.12 5.44 8.06 -2.91 -0.02 5.41 16 29 H 0.09 5.43 6.83 -2.92 -0.02 5.41 16 30 H 0.28 17.60 6.21 -92.71 -0.58 17.02 16 Total: -1.00 -68.86 260.48 6.73 -62.14 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 1.30 Total: 23.76 kcal Atomic # 6 Polarization: -58.43 SS G_CDS: 3.77 Total: -54.66 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.16 Total: -73.76 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.75 Total: -6.65 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.06 Total: 49.17 kcal Total: -68.86 6.73 -62.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212868229.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.506 kcal (2) G-P(sol) polarization free energy of solvation -68.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds