Wall clock time and date at job start Mon Mar 30 2020 03:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47487 * 2 1 4 4 F 1.39904 * 109.47261 * 120.00105 * 2 1 3 5 5 C 1.53000 * 109.47120 * 240.00319 * 2 1 3 6 6 C 1.52994 * 109.47391 * 174.99909 * 5 2 1 7 7 N 1.46504 * 109.47550 * 179.97438 * 6 5 2 8 8 C 1.36165 * 125.74787 * 265.03111 * 7 6 5 9 9 C 1.35970 * 109.05041 * 179.97438 * 8 7 6 10 10 C 1.39302 * 108.09198 * 0.26422 * 9 8 7 11 11 C 1.38021 * 125.73540 * 85.00049 * 7 6 5 12 12 C 1.39952 * 126.35934 * 359.97438 * 11 7 6 13 13 H 1.07998 * 119.99813 * 0.02562 * 12 11 7 14 14 C 1.40067 * 119.99800 * 179.97438 * 12 11 7 15 15 N 1.30861 * 120.00210 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99802 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46692 * 89.99984 * 16 14 12 18 18 H 1.48496 * 109.47394 * 209.99929 * 16 14 12 19 19 H 1.48504 * 109.46939 * 330.00459 * 16 14 12 20 20 H 1.08998 * 109.47487 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46843 * 299.99956 * 1 2 3 22 22 H 1.09000 * 109.47343 * 59.99738 * 1 2 3 23 23 H 1.09003 * 109.47048 * 55.00091 * 5 2 1 24 24 H 1.09004 * 109.47137 * 295.00253 * 5 2 1 25 25 H 1.09003 * 109.46876 * 60.00076 * 6 5 2 26 26 H 1.08997 * 109.47570 * 300.00076 * 6 5 2 27 27 H 1.07999 * 125.46884 * 359.95404 * 8 7 6 28 28 H 1.08002 * 125.94982 * 179.97438 * 9 8 7 29 29 H 1.08002 * 126.47382 * 179.70711 * 10 9 8 30 30 H 0.97004 * 119.99468 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7212 -1.2493 6 6 3.5647 -0.6132 -1.3138 7 7 4.0532 -1.3043 -2.5097 8 6 4.4987 -2.5900 -2.5593 9 6 4.8686 -2.8827 -3.8345 10 6 4.6580 -1.7496 -4.6169 11 6 4.1385 -0.7617 -3.7759 12 6 3.7765 0.5381 -4.1477 13 1 3.3874 1.2225 -3.4085 14 6 3.9200 0.9514 -5.4783 15 7 4.3920 0.1221 -6.3738 16 14 3.4362 2.6861 -5.9747 17 1 4.6074 3.5874 -5.8289 18 1 2.9830 2.6881 -7.3889 19 1 2.3337 3.1617 -5.1009 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.6053 -0.2616 -2.1370 24 1 1.7515 -1.7715 -1.2057 25 1 3.9993 -1.0728 -0.4261 26 1 3.8532 0.4370 -1.3574 27 1 4.5504 -3.2682 -1.7203 28 1 5.2621 -3.8274 -4.1796 29 1 4.8565 -1.6534 -5.6742 30 1 4.4916 0.4086 -7.2952 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212868285.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:04 Heat of formation + Delta-G solvation = -24.849466 kcal Electronic energy + Delta-G solvation = -13834.921946 eV Core-core repulsion = 11351.663978 eV Total energy + Delta-G solvation = -2483.257968 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.47576 -39.07902 -34.50950 -33.34244 -31.14342 -28.33282 -27.47504 -24.20617 -23.13360 -21.04862 -19.12215 -18.48895 -16.86538 -16.35997 -15.41096 -15.09758 -14.82746 -14.28079 -13.49700 -13.06725 -12.55273 -12.53755 -12.27064 -11.82850 -11.57980 -11.48548 -11.30710 -11.08521 -10.70141 -10.52375 -10.45869 -10.30012 -9.91613 -9.48581 -9.20098 -7.01334 -6.62829 -6.39879 -4.04526 3.03104 3.13835 3.16323 3.83628 4.01380 4.36526 4.71172 4.78571 4.90283 4.93689 5.15437 5.44809 5.53137 5.67931 5.80110 5.91067 5.98354 6.04841 6.41074 6.48385 6.56425 6.99864 7.27113 7.44170 7.87141 8.08606 8.36376 8.49689 8.99952 9.16455 9.33765 9.50300 10.49381 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.025879 B = 0.010457 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.683947 B = 2676.871265 C = 3564.988794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.089 3.911 3 H 0.084 0.916 4 F -0.219 7.219 5 C -0.161 4.161 6 C 0.126 3.874 7 N -0.481 5.481 8 C -0.134 4.134 9 C -0.181 4.181 10 C -0.293 4.293 11 C 0.209 3.791 12 C -0.452 4.452 13 H 0.065 0.935 14 C 0.071 3.929 15 N -0.803 5.803 16 Si 0.916 3.084 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.267 1.267 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.153 0.847 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.594 2.328 7.582 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.052 3.948 3 H 0.101 0.899 4 F -0.200 7.200 5 C -0.200 4.200 6 C 0.003 3.997 7 N -0.165 5.165 8 C -0.257 4.257 9 C -0.207 4.207 10 C -0.316 4.316 11 C 0.100 3.900 12 C -0.488 4.488 13 H 0.084 0.916 14 C -0.144 4.144 15 N -0.431 5.431 16 Si 0.741 3.259 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.191 1.191 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.095 0.905 23 H 0.110 0.890 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.139 0.861 28 H 0.117 0.883 29 H 0.170 0.830 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.618 2.400 7.655 9.794 hybrid contribution -0.197 0.637 -0.120 0.677 sum -5.815 3.037 7.535 9.990 Atomic orbital electron populations 1.22351 0.94497 1.03447 1.03195 1.21570 0.94677 0.96356 0.82152 0.89850 1.92790 1.90354 1.83546 1.53290 1.22623 0.97767 1.02062 0.97520 1.21227 0.92639 0.98062 0.87822 1.43907 1.54629 1.11002 1.06978 1.20915 1.19090 0.87592 0.98126 1.20531 1.07857 0.98530 0.93756 1.21781 1.16917 0.92486 1.00428 1.18167 0.97470 0.93708 0.80609 1.18362 1.40428 0.95711 0.94262 0.91630 1.25590 0.93982 0.98824 0.96026 1.69788 1.35464 1.34858 1.02990 0.86199 0.79307 0.82134 0.78211 1.19805 1.20378 1.19115 0.91542 0.91770 0.90513 0.88990 0.90776 0.91228 0.90715 0.86106 0.88342 0.83013 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.65 37.16 0.36 -1.64 16 2 C 0.09 1.22 3.96 -26.73 -0.11 1.11 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 F -0.22 -3.35 16.76 2.25 0.04 -3.31 16 5 C -0.16 -2.71 5.31 -26.73 -0.14 -2.85 16 6 C 0.13 2.46 5.70 -4.04 -0.02 2.44 16 7 N -0.48 -11.76 2.79 -114.07 -0.32 -12.07 16 8 C -0.13 -3.27 11.41 -16.44 -0.19 -3.46 16 9 C -0.18 -4.69 10.79 -40.00 -0.43 -5.12 16 10 C -0.29 -8.41 9.80 -38.62 -0.38 -8.79 16 11 C 0.21 5.81 6.69 -83.87 -0.56 5.24 16 12 C -0.45 -12.20 9.00 -38.25 -0.34 -12.54 16 13 H 0.07 1.65 7.27 -52.49 -0.38 1.27 16 14 C 0.07 1.85 5.50 -17.28 -0.10 1.75 16 15 N -0.80 -21.75 10.26 55.56 0.57 -21.18 16 16 Si 0.92 19.27 29.56 -169.99 -5.03 14.24 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.07 1.26 7.92 -51.93 -0.41 0.85 16 26 H 0.07 1.43 7.57 -51.93 -0.39 1.03 16 27 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 28 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 29 H 0.15 4.54 5.70 -52.49 -0.30 4.24 16 30 H 0.27 6.73 8.30 -40.82 -0.34 6.40 16 LS Contribution 260.21 15.07 3.92 3.92 Total: -1.00 -29.76 260.21 -6.73 -36.49 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.00 Total: 5.76 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -1.91 Total: -23.85 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.25 Total: -33.26 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.04 Total: -3.31 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.76 -6.73 -36.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212868285.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.639 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds