Wall clock time and date at job start Mon Mar 30 2020 03:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47487 * 2 1 4 4 F 1.39904 * 109.47261 * 120.00105 * 2 1 3 5 5 C 1.53000 * 109.47120 * 240.00319 * 2 1 3 6 6 C 1.52994 * 109.47391 * 174.99909 * 5 2 1 7 7 N 1.46504 * 109.47550 * 179.97438 * 6 5 2 8 8 C 1.36165 * 125.74787 * 265.03111 * 7 6 5 9 9 C 1.35970 * 109.05041 * 179.97438 * 8 7 6 10 10 C 1.39302 * 108.09198 * 0.26422 * 9 8 7 11 11 C 1.38021 * 125.73540 * 85.00049 * 7 6 5 12 12 C 1.39952 * 126.35934 * 359.97438 * 11 7 6 13 13 H 1.07998 * 119.99813 * 0.02562 * 12 11 7 14 14 C 1.40067 * 119.99800 * 179.97438 * 12 11 7 15 15 N 1.30861 * 120.00210 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99802 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46692 * 89.99984 * 16 14 12 18 18 H 1.48496 * 109.47394 * 209.99929 * 16 14 12 19 19 H 1.48504 * 109.46939 * 330.00459 * 16 14 12 20 20 H 1.08998 * 109.47487 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46843 * 299.99956 * 1 2 3 22 22 H 1.09000 * 109.47343 * 59.99738 * 1 2 3 23 23 H 1.09003 * 109.47048 * 55.00091 * 5 2 1 24 24 H 1.09004 * 109.47137 * 295.00253 * 5 2 1 25 25 H 1.09003 * 109.46876 * 60.00076 * 6 5 2 26 26 H 1.08997 * 109.47570 * 300.00076 * 6 5 2 27 27 H 1.07999 * 125.46884 * 359.95404 * 8 7 6 28 28 H 1.08002 * 125.94982 * 179.97438 * 9 8 7 29 29 H 1.08002 * 126.47382 * 179.70711 * 10 9 8 30 30 H 0.97004 * 119.99468 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7212 -1.2493 6 6 3.5647 -0.6132 -1.3138 7 7 4.0532 -1.3043 -2.5097 8 6 4.4987 -2.5900 -2.5593 9 6 4.8686 -2.8827 -3.8345 10 6 4.6580 -1.7496 -4.6169 11 6 4.1385 -0.7617 -3.7759 12 6 3.7765 0.5381 -4.1477 13 1 3.3874 1.2225 -3.4085 14 6 3.9200 0.9514 -5.4783 15 7 4.3920 0.1221 -6.3738 16 14 3.4362 2.6861 -5.9747 17 1 4.6074 3.5874 -5.8289 18 1 2.9830 2.6881 -7.3889 19 1 2.3337 3.1617 -5.1009 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.6053 -0.2616 -2.1370 24 1 1.7515 -1.7715 -1.2057 25 1 3.9993 -1.0728 -0.4261 26 1 3.8532 0.4370 -1.3574 27 1 4.5504 -3.2682 -1.7203 28 1 5.2621 -3.8274 -4.1796 29 1 4.8565 -1.6534 -5.6742 30 1 4.4916 0.4086 -7.2952 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212868285.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:03 Heat of formation + Delta-G solvation = -40.578254 kcal Electronic energy + Delta-G solvation = -13835.603997 eV Core-core repulsion = 11351.663978 eV Total energy + Delta-G solvation = -2483.940019 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.62326 -41.01086 -35.93142 -35.27124 -32.60715 -30.33051 -29.00625 -26.22263 -24.57429 -22.25963 -21.14618 -20.39769 -18.69939 -17.57557 -17.29222 -16.42296 -16.19986 -15.83506 -15.03017 -14.65026 -14.31491 -13.73856 -13.61368 -13.43713 -13.30537 -13.09752 -12.97770 -12.66276 -12.26918 -11.97228 -11.86945 -11.80466 -11.65898 -11.47625 -11.10724 -8.99172 -8.68521 -8.34796 -6.10510 1.35510 1.42380 1.56603 1.94925 2.25055 2.66619 2.69065 3.47801 3.67396 3.76185 3.79392 3.91191 4.19991 4.42533 4.46172 4.66590 4.68698 4.83043 5.04705 5.09644 5.18411 5.21495 5.30418 5.44098 5.88681 6.06809 6.29403 6.45797 6.94521 7.11763 7.34933 7.50168 8.56826 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.025879 B = 0.010457 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.683947 B = 2676.871265 C = 3564.988794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.093 3.907 3 H 0.101 0.899 4 F -0.227 7.227 5 C -0.151 4.151 6 C 0.119 3.881 7 N -0.484 5.484 8 C -0.120 4.120 9 C -0.205 4.205 10 C -0.338 4.338 11 C 0.184 3.816 12 C -0.478 4.478 13 H 0.078 0.922 14 C 0.021 3.979 15 N -0.838 5.838 16 Si 0.995 3.005 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.253 1.253 20 H 0.064 0.936 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.156 0.844 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 3.655 8.989 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.057 3.943 3 H 0.119 0.881 4 F -0.208 7.208 5 C -0.190 4.190 6 C -0.003 4.003 7 N -0.168 5.168 8 C -0.244 4.244 9 C -0.231 4.231 10 C -0.361 4.361 11 C 0.075 3.925 12 C -0.513 4.513 13 H 0.096 0.904 14 C -0.191 4.191 15 N -0.467 5.467 16 Si 0.816 3.184 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.176 1.176 20 H 0.083 0.917 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.173 0.827 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.701 3.717 9.097 11.895 hybrid contribution 0.176 0.145 -0.521 0.569 sum -6.525 3.862 8.576 11.447 Atomic orbital electron populations 1.22338 0.92439 1.03820 1.04547 1.21625 0.96244 0.96374 0.80081 0.88096 1.92778 1.90624 1.83839 1.53564 1.22488 0.95649 1.01984 0.98836 1.21546 0.94495 0.97935 0.86342 1.44189 1.54063 1.11092 1.07435 1.21454 1.16522 0.87945 0.98490 1.20778 1.09136 0.98782 0.94420 1.21818 1.19536 0.94561 1.00215 1.18458 0.97866 0.94196 0.82004 1.18732 1.41317 0.95879 0.95355 0.90432 1.26685 0.93309 1.03458 0.95600 1.69929 1.36012 1.37162 1.03574 0.85010 0.79326 0.76043 0.78038 1.19151 1.19794 1.17635 0.91726 0.89847 0.89761 0.90387 0.91556 0.89536 0.90432 0.82660 0.86642 0.85266 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 9.65 71.98 0.69 -2.72 16 2 C 0.09 2.30 3.96 30.59 0.12 2.42 16 3 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 4 F -0.23 -6.34 16.76 44.97 0.75 -5.59 16 5 C -0.15 -4.83 5.31 30.59 0.16 -4.67 16 6 C 0.12 4.45 5.70 86.38 0.49 4.94 16 7 N -0.48 -23.45 2.79 -514.81 -1.44 -24.88 16 8 C -0.12 -5.74 11.41 83.49 0.95 -4.79 16 9 C -0.21 -10.78 10.79 22.00 0.24 -10.54 16 10 C -0.34 -20.07 9.80 22.89 0.22 -19.84 16 11 C 0.18 10.42 6.69 38.95 0.26 10.68 16 12 C -0.48 -25.95 9.00 23.13 0.21 -25.74 16 13 H 0.08 3.86 7.27 -2.91 -0.02 3.84 16 14 C 0.02 1.12 5.50 85.28 0.47 1.59 16 15 N -0.84 -46.64 10.26 21.86 0.22 -46.41 16 16 Si 0.99 39.03 29.56 68.60 2.03 41.06 16 17 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 18 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 19 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 20 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 24 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 25 H 0.09 2.93 7.92 -2.39 -0.02 2.91 16 26 H 0.08 2.85 7.57 -2.39 -0.02 2.83 16 27 H 0.16 6.23 8.06 -2.91 -0.02 6.21 16 28 H 0.12 5.44 8.06 -2.91 -0.02 5.42 16 29 H 0.13 8.16 5.70 -2.91 -0.02 8.14 16 30 H 0.28 14.07 8.30 -92.71 -0.77 13.31 16 Total: -1.00 -64.85 260.21 6.51 -58.35 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 1.11 Total: 26.15 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 3.82 Total: -48.68 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -1.21 Total: -71.29 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.75 Total: -5.59 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -64.85 6.51 -58.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212868285.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.770 kcal (2) G-P(sol) polarization free energy of solvation -64.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds