Wall clock time and date at job start Mon Mar 30 2020 03:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29946 * 126.28301 * 2 1 4 4 O 1.21309 * 110.24521 * 179.73128 * 3 2 1 5 5 C 1.33639 * 109.80928 * 0.46841 * 4 3 2 6 6 C 1.50706 * 126.55037 * 179.79972 * 5 4 3 7 7 C 1.52997 * 109.47238 * 269.69219 * 6 5 4 8 8 N 1.46896 * 109.47114 * 179.97438 * 7 6 5 9 9 C 1.46899 * 111.00159 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47395 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99498 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00050 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00269 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99934 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47251 * 60.00104 * 14 12 10 16 16 H 1.48509 * 109.47292 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47158 * 300.00111 * 14 12 10 18 18 N 1.31128 * 106.90120 * 359.54177 * 5 4 3 19 19 H 1.09001 * 109.46720 * 269.97027 * 1 2 3 20 20 H 1.08998 * 109.47458 * 29.96895 * 1 2 3 21 21 H 1.09000 * 109.47577 * 149.97125 * 1 2 3 22 22 H 1.09001 * 109.46953 * 29.68831 * 6 5 4 23 23 H 1.09000 * 109.47318 * 149.68429 * 6 5 4 24 24 H 1.09001 * 109.46832 * 299.99686 * 7 6 5 25 25 H 1.09004 * 109.47261 * 59.99705 * 7 6 5 26 26 H 1.00902 * 111.00063 * 303.95550 * 8 7 6 27 27 H 1.09002 * 109.47226 * 299.99824 * 9 8 7 28 28 H 1.08996 * 109.47244 * 60.00226 * 9 8 7 29 29 H 0.97000 * 120.00251 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0053 5 6 3.5298 -0.6211 -0.0009 6 6 4.7969 -1.4370 -0.0016 7 6 5.2252 -1.7126 -1.4443 8 7 6.4606 -2.5074 -1.4450 9 6 6.9025 -2.7924 -2.8167 10 6 8.1692 -3.6080 -2.7772 11 1 8.6027 -3.8863 -1.8280 12 6 8.7744 -3.9988 -3.9527 13 7 8.2466 -3.6595 -5.1085 14 14 10.3448 -5.0091 -3.9037 15 1 10.0899 -6.2861 -3.1897 16 1 10.7914 -5.2974 -5.2904 17 1 11.4019 -4.2466 -3.1922 18 7 2.3030 -1.0841 -0.0006 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8902 -0.5133 21 1 -0.3634 -0.8897 -0.5143 22 1 5.5844 -0.8855 0.5121 23 1 4.6209 -2.3821 0.5121 24 1 4.4377 -2.2641 -1.9580 25 1 5.4013 -0.7675 -1.9580 26 1 7.1877 -2.0460 -0.9191 27 1 6.1267 -3.3520 -3.3394 28 1 7.0898 -1.8550 -3.3403 29 1 8.6726 -3.9341 -5.9356 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231891712.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:02 Heat of formation + Delta-G solvation = 32.579324 kcal Electronic energy + Delta-G solvation = -13143.704997 eV Core-core repulsion = 10682.857290 eV Total energy + Delta-G solvation = -2460.847707 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -46.64162 -37.81845 -37.06702 -35.28161 -34.12006 -31.43115 -30.03639 -28.20346 -25.12803 -24.19617 -23.21346 -22.16478 -19.22122 -18.59365 -18.36597 -16.83461 -16.70827 -16.06222 -15.31967 -14.99632 -14.50528 -14.47718 -14.16339 -13.84701 -13.62885 -13.26818 -13.05818 -12.65519 -12.63074 -12.28554 -12.22862 -12.09059 -11.95549 -11.35361 -10.89177 -10.63994 -9.19502 -8.20969 -6.32332 0.04722 1.15060 1.44814 1.48298 1.56123 1.74729 2.42407 2.66035 3.04547 3.13071 3.58433 3.93474 4.01988 4.17435 4.44381 4.52087 4.57143 4.68614 4.82215 4.93166 4.95877 5.08862 5.11150 5.26170 5.61980 6.00739 6.38454 6.71342 6.90358 7.09096 7.38835 8.90601 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.085255 B = 0.004668 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.346235 B = 5996.600564 C = 6083.633975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.162 3.838 3 N -0.412 5.412 4 O 0.064 5.936 5 C 0.201 3.799 6 C -0.013 4.013 7 C 0.068 3.932 8 N -0.682 5.682 9 C 0.207 3.793 10 C -0.535 4.535 11 H 0.071 0.929 12 C -0.002 4.002 13 N -0.937 5.937 14 Si 0.975 3.025 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.264 1.264 18 N -0.505 5.505 19 H 0.107 0.893 20 H 0.098 0.902 21 H 0.100 0.900 22 H 0.130 0.870 23 H 0.128 0.872 24 H 0.057 0.943 25 H 0.024 0.976 26 H 0.345 0.655 27 H -0.001 1.001 28 H -0.036 1.036 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.416 6.455 11.304 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.125 5.125 4 O 0.010 5.990 5 C -0.020 4.020 6 C -0.052 4.052 7 C -0.063 4.063 8 N -0.313 5.313 9 C 0.079 3.921 10 C -0.573 4.573 11 H 0.089 0.911 12 C -0.200 4.200 13 N -0.577 5.577 14 Si 0.799 3.201 15 H -0.192 1.192 16 H -0.212 1.212 17 H -0.189 1.189 18 N -0.240 5.240 19 H 0.126 0.874 20 H 0.117 0.883 21 H 0.119 0.881 22 H 0.149 0.851 23 H 0.146 0.854 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.163 0.837 27 H 0.017 0.983 28 H -0.018 1.018 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.353 6.352 11.189 17.159 hybrid contribution 1.102 0.418 -0.844 1.450 sum -10.251 6.769 10.344 16.060 Atomic orbital electron populations 1.20362 0.80164 1.05702 1.05734 1.26733 1.02314 0.82997 0.99034 1.74609 0.89699 1.24770 1.23392 1.85263 1.22403 1.25223 1.66091 1.29117 0.97399 0.81847 0.93612 1.20259 0.87589 0.98958 0.98440 1.21762 0.93935 0.95747 0.94905 1.60459 1.06248 1.48537 1.16079 1.19220 0.94584 0.93444 0.84865 1.21537 1.08892 1.33690 0.93216 0.91066 1.25993 1.01608 0.97483 0.94881 1.70092 1.41916 1.47551 0.98117 0.85348 0.78643 0.79015 0.77056 1.19238 1.21156 1.18867 1.71972 1.00389 1.30034 1.21625 0.87432 0.88316 0.88129 0.85150 0.85381 0.92464 0.95730 0.83710 0.98324 1.01820 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 10.51 71.24 0.75 -0.22 15 2 C 0.16 4.17 8.22 138.46 1.14 5.31 15 3 N -0.41 -11.75 12.16 -60.32 -0.73 -12.48 15 4 O 0.06 1.81 11.31 74.86 0.85 2.65 15 5 C 0.20 5.38 7.77 88.38 0.69 6.07 15 6 C -0.01 -0.32 6.10 29.85 0.18 -0.14 15 7 C 0.07 2.21 5.67 86.30 0.49 2.70 15 8 N -0.68 -27.09 6.49 -517.94 -3.36 -30.45 15 9 C 0.21 10.81 5.44 85.56 0.47 11.27 15 10 C -0.54 -29.73 9.32 25.60 0.24 -29.50 15 11 H 0.07 3.76 7.81 -2.91 -0.02 3.74 15 12 C 0.00 -0.09 5.46 84.65 0.46 0.37 15 13 N -0.94 -56.37 13.29 21.45 0.28 -56.08 15 14 Si 0.98 43.47 29.54 68.60 2.03 45.50 15 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 16 H -0.29 -12.56 7.11 99.48 0.71 -11.86 15 17 H -0.26 -11.16 7.11 99.48 0.71 -10.45 15 18 N -0.51 -14.46 11.55 -303.20 -3.50 -17.97 15 19 H 0.11 1.26 8.14 -2.39 -0.02 1.24 15 20 H 0.10 1.28 8.14 -2.39 -0.02 1.26 15 21 H 0.10 1.40 8.14 -2.39 -0.02 1.38 15 22 H 0.13 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.13 2.86 8.14 -2.39 -0.02 2.84 15 24 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.02 0.82 8.14 -2.38 -0.02 0.80 15 26 H 0.34 12.22 8.72 -89.69 -0.78 11.44 15 27 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 15 28 H -0.04 -2.02 8.14 -2.39 -0.02 -2.04 15 29 H 0.26 15.00 8.31 -92.71 -0.77 14.23 15 Total: -1.00 -67.27 262.25 0.34 -66.92 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.37 Total: 6.03 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 4.41 Total: -4.12 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -7.31 Total: -116.98 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: 0.85 Total: 2.65 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -67.27 0.34 -66.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231891712.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.503 kcal (2) G-P(sol) polarization free energy of solvation -67.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds