Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.53001 * 109.47147 * 89.99619 * 4 3 2 6 6 C 1.38842 * 120.00125 * 269.72221 * 3 2 1 7 7 N 1.31156 * 126.17708 * 0.02592 * 6 3 2 8 8 O 1.21266 * 110.56290 * 179.97438 * 7 6 3 9 9 C 1.34739 * 109.71165 * 0.02562 * 8 7 6 10 10 C 1.40323 * 126.70631 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00168 * 179.97438 * 10 9 8 12 12 C 1.40443 * 119.99772 * 359.97438 * 10 9 8 13 13 N 1.30515 * 119.99877 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99800 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.47275 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47009 * 120.00067 * 14 12 10 17 17 H 1.48499 * 109.47383 * 239.99987 * 14 12 10 18 18 N 1.33278 * 106.58553 * 359.77160 * 9 8 7 19 19 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 21 21 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 22 22 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 23 23 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 24 24 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 25 25 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 26 26 H 1.08997 * 109.47273 * 60.00010 * 5 4 3 27 27 H 1.09005 * 109.47395 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.47272 * 300.00321 * 5 4 3 29 29 H 0.97001 * 119.99536 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.7075 1.8314 1.7104 6 6 2.2552 2.0339 -1.2024 7 7 2.0837 1.5327 -2.4022 8 8 2.3761 2.3485 -3.2504 9 6 2.7781 3.4919 -2.6618 10 6 3.1967 4.6654 -3.3073 11 1 3.4975 5.5240 -2.7253 12 6 3.2245 4.7233 -4.7103 13 7 2.8615 3.6855 -5.4136 14 14 3.7811 6.2857 -5.5696 15 1 4.1380 7.3090 -4.5542 16 1 4.9674 5.9911 -6.4129 17 1 2.6810 6.7991 -6.4249 18 7 2.6962 3.2920 -1.3466 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5140 -0.8900 22 1 1.8933 -0.5137 -0.8901 23 1 1.8933 -0.5138 0.8900 24 1 2.0955 3.1410 1.1384 25 1 1.5817 1.6877 2.0284 26 1 4.3883 2.2155 0.9508 27 1 3.8891 2.3448 2.6547 28 1 3.8745 0.7621 1.8407 29 1 2.8811 3.7255 -6.3826 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233971788.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = 32.310234 kcal Electronic energy + Delta-G solvation = -14071.051763 eV Core-core repulsion = 11610.192387 eV Total energy + Delta-G solvation = -2460.859376 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.73857 -38.60080 -36.00731 -34.85341 -33.01751 -32.15180 -29.51071 -28.36325 -24.65171 -24.26202 -23.10306 -21.61082 -19.53514 -17.76250 -17.58314 -17.17636 -16.57000 -15.87261 -15.13195 -14.79240 -14.67583 -14.27111 -13.55986 -13.47375 -13.29237 -13.05927 -12.89501 -12.63129 -12.11117 -12.08680 -11.94980 -11.89127 -11.76843 -11.58250 -10.79023 -10.53871 -8.90967 -8.69437 -7.03830 1.09146 1.42075 1.63667 1.66584 2.01269 2.18121 2.26854 3.09731 3.49186 3.96832 4.06222 4.27983 4.34259 4.50479 4.53335 4.60499 4.65745 4.83770 4.94823 4.97850 5.06398 5.21487 5.29279 5.37039 5.87788 6.11823 6.14758 6.49318 6.58483 6.72403 8.12266 8.55313 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.051489 B = 0.008314 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.678189 B = 3367.069603 C = 3753.021618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 N -0.594 5.594 4 C 0.137 3.863 5 C -0.156 4.156 6 C 0.422 3.578 7 N -0.545 5.545 8 O -0.002 6.002 9 C 0.284 3.716 10 C -0.436 4.436 11 H 0.119 0.881 12 C 0.029 3.971 13 N -0.797 5.797 14 Si 1.023 2.977 15 H -0.248 1.248 16 H -0.257 1.257 17 H -0.257 1.257 18 N -0.658 5.658 19 H 0.088 0.912 20 H 0.067 0.933 21 H 0.018 0.982 22 H 0.048 0.952 23 H 0.109 0.891 24 H 0.053 0.947 25 H 0.106 0.894 26 H 0.020 0.980 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.475 -1.275 7.169 7.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 N -0.322 5.322 4 C 0.014 3.986 5 C -0.215 4.215 6 C 0.060 3.940 7 N -0.296 5.296 8 O -0.035 6.035 9 C 0.094 3.906 10 C -0.473 4.473 11 H 0.137 0.863 12 C -0.193 4.193 13 N -0.424 5.424 14 Si 0.839 3.161 15 H -0.170 1.170 16 H -0.181 1.181 17 H -0.181 1.181 18 N -0.408 5.408 19 H 0.107 0.893 20 H 0.086 0.914 21 H 0.038 0.962 22 H 0.067 0.933 23 H 0.127 0.873 24 H 0.071 0.929 25 H 0.124 0.876 26 H 0.039 0.961 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.747 -2.020 7.247 7.560 hybrid contribution 0.184 0.477 -0.763 0.919 sum -0.563 -1.543 6.483 6.688 Atomic orbital electron populations 1.22112 0.95820 1.02732 1.00929 1.21402 0.94543 0.80351 1.02650 1.45494 1.73467 1.13661 0.99608 1.21369 0.97234 0.96798 0.83177 1.22103 0.96352 1.02083 1.00969 1.22244 0.95113 0.88214 0.88396 1.74412 1.38845 1.18332 0.98034 1.85427 1.67563 1.19514 1.30983 1.24569 0.90608 0.89826 0.85584 1.19094 1.40151 0.95648 0.92450 0.86319 1.27392 0.91835 1.02806 0.97256 1.69730 1.30531 1.32120 1.10066 0.84566 0.78914 0.74671 0.77941 1.17046 1.18136 1.18119 1.72183 1.38698 1.14970 1.14970 0.89309 0.91437 0.96243 0.93350 0.87336 0.92888 0.87624 0.96065 0.89393 0.91778 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 10.24 71.98 0.74 -3.87 15 2 C 0.13 4.38 6.28 86.38 0.54 4.92 15 3 N -0.59 -24.46 2.58 -714.39 -1.85 -26.31 15 4 C 0.14 4.50 6.28 86.38 0.54 5.04 15 5 C -0.16 -4.60 10.24 71.98 0.74 -3.86 15 6 C 0.42 22.84 8.31 261.13 2.17 25.01 15 7 N -0.55 -32.34 11.53 -63.39 -0.73 -33.07 15 8 O 0.00 -0.15 9.72 64.37 0.63 0.48 15 9 C 0.28 17.29 7.81 85.04 0.66 17.95 15 10 C -0.44 -24.07 9.48 23.31 0.22 -23.85 15 11 H 0.12 6.13 7.85 -2.91 -0.02 6.11 15 12 C 0.03 1.42 5.50 85.43 0.47 1.89 15 13 N -0.80 -42.15 12.05 21.91 0.26 -41.88 15 14 Si 1.02 35.67 29.56 68.60 2.03 37.70 15 15 H -0.25 -8.25 7.11 99.48 0.71 -7.54 15 16 H -0.26 -8.45 7.11 99.48 0.71 -7.75 15 17 H -0.26 -8.44 7.11 99.48 0.71 -7.74 15 18 N -0.66 -38.31 10.99 -313.90 -3.45 -41.76 15 19 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 20 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.02 0.70 8.14 -2.38 -0.02 0.68 15 22 H 0.05 1.84 7.67 -2.39 -0.02 1.82 15 23 H 0.11 2.62 8.07 -2.39 -0.02 2.60 15 24 H 0.05 2.01 7.68 -2.39 -0.02 1.99 15 25 H 0.11 2.55 8.07 -2.38 -0.02 2.53 15 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 15 27 H 0.09 2.02 8.14 -2.38 -0.02 2.00 15 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 29 H 0.30 13.98 8.29 -92.71 -0.77 13.21 15 Total: -1.00 -71.71 258.38 4.11 -67.59 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.14 Total: 14.02 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: 6.08 Total: 23.23 kcal Atomic # 7 Polarization: -137.25 SS G_CDS: -5.76 Total: -143.02 kcal Atomic # 8 Polarization: -0.15 SS G_CDS: 0.63 Total: 0.48 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -71.71 4.11 -67.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233971788.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.902 kcal (2) G-P(sol) polarization free energy of solvation -71.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds