Wall clock time and date at job start Mon Mar 30 2020 03:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.47239 * 2 1 4 4 C 1.46497 * 120.00107 * 269.99955 * 3 2 1 5 5 C 1.38847 * 120.00064 * 89.99533 * 3 2 1 6 6 N 1.30631 * 126.38601 * 359.97438 * 5 3 2 7 7 O 1.21295 * 110.12478 * 180.02562 * 6 5 3 8 8 C 1.33647 * 109.97779 * 359.97438 * 7 6 5 9 9 C 1.50697 * 126.45716 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47266 * 270.02467 * 9 8 7 11 11 H 1.07999 * 119.99988 * 0.02562 * 10 9 8 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47021 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47081 * 119.99727 * 14 12 10 17 17 H 1.48501 * 109.47213 * 240.00099 * 14 12 10 18 18 N 1.31036 * 107.07956 * 0.26574 * 8 7 6 19 19 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46982 * 300.00384 * 1 2 3 21 21 H 1.08998 * 109.46547 * 60.00073 * 1 2 3 22 22 H 1.08994 * 109.47180 * 239.99917 * 2 1 3 23 23 H 1.09003 * 109.47064 * 119.99426 * 2 1 3 24 24 H 1.09000 * 109.47240 * 270.00424 * 4 3 2 25 25 H 1.09005 * 109.46692 * 29.99460 * 4 3 2 26 26 H 1.09001 * 109.47512 * 149.99845 * 4 3 2 27 27 H 1.09004 * 109.47205 * 150.02561 * 9 8 7 28 28 H 1.08997 * 109.47395 * 30.03053 * 9 8 7 29 29 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2498 2.0358 1.2024 6 7 2.0748 1.5427 2.3994 7 8 2.3666 2.3690 3.2380 8 6 2.7668 3.4985 2.6461 9 6 3.2137 4.7614 3.3364 10 6 2.0233 5.6564 3.5664 11 1 1.0412 5.3420 3.2453 12 6 2.1879 6.8767 4.1868 13 7 3.3830 7.2572 4.5827 14 14 0.7122 7.9858 4.4726 15 1 -0.5103 7.3290 3.9440 16 1 0.5525 8.2318 5.9284 17 1 0.9214 9.2784 3.7721 18 7 2.6924 3.3025 1.3527 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 3.2921 1.9005 -1.5834 25 1 1.5818 1.6876 -2.0284 26 1 2.0957 3.1411 -1.1384 27 1 3.9419 5.2787 2.7116 28 1 3.6699 4.5102 4.2939 29 1 3.4988 8.1159 5.0188 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233992911.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:53 Heat of formation + Delta-G solvation = 69.331926 kcal Electronic energy + Delta-G solvation = -13752.443819 eV Core-core repulsion = 11293.189824 eV Total energy + Delta-G solvation = -2459.253995 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.38575 -37.41574 -34.54488 -33.40665 -31.55496 -30.68107 -28.40146 -26.19131 -23.94610 -23.43585 -21.96049 -19.96577 -17.33443 -17.08121 -16.22601 -15.64590 -15.08045 -14.63414 -14.25966 -13.64142 -13.12323 -12.56014 -12.44797 -12.23875 -12.02304 -11.76707 -11.25493 -11.16659 -11.07849 -10.90589 -10.74524 -10.21648 -9.97961 -9.90125 -9.12103 -8.58613 -7.64053 -6.21716 -4.26643 2.22151 2.88602 3.25181 3.29231 3.33573 3.39698 4.04698 4.35665 4.77904 4.91936 5.14595 5.19703 5.24021 5.39102 5.54556 5.67935 5.72021 5.90622 5.96546 6.20099 6.53996 6.73319 7.13650 7.21582 7.31148 7.57623 7.72676 7.96889 8.74049 9.25586 9.37810 10.88798 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.047377 B = 0.007064 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.856859 B = 3962.964834 C = 4055.308522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 N -0.592 5.592 4 C 0.112 3.888 5 C 0.416 3.584 6 N -0.460 5.460 7 O 0.042 5.958 8 C 0.255 3.745 9 C 0.100 3.900 10 C -0.520 4.520 11 H 0.061 0.939 12 C 0.065 3.935 13 N -0.889 5.889 14 Si 0.906 3.094 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.281 1.281 18 N -0.534 5.534 19 H 0.063 0.937 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 -10.061 -8.405 13.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 N -0.320 5.320 4 C -0.031 4.031 5 C 0.055 3.945 6 N -0.193 5.193 7 O 0.001 5.999 8 C 0.037 3.963 9 C 0.062 3.938 10 C -0.559 4.559 11 H 0.080 0.920 12 C -0.138 4.138 13 N -0.526 5.526 14 Si 0.733 3.267 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.207 1.207 18 N -0.274 5.274 19 H 0.082 0.918 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.626 -10.597 -8.611 13.905 hybrid contribution -0.754 0.758 0.146 1.079 sum -3.380 -9.839 -8.465 13.412 Atomic orbital electron populations 1.22215 0.96489 1.01743 1.02490 1.21305 0.93983 0.80890 1.02608 1.45039 1.73598 1.13029 1.00370 1.21512 0.99982 0.98416 0.83207 1.22111 0.96790 0.87727 0.87829 1.74670 1.31256 1.15455 0.97880 1.85208 1.62308 1.19330 1.33086 1.29782 0.88780 0.91180 0.86567 1.18188 0.98255 0.81659 0.95729 1.20841 0.93122 1.01914 1.40053 0.92038 1.24928 0.96464 0.97544 0.94839 1.69939 1.21582 1.21713 1.39395 0.86304 0.82234 0.80159 0.78011 1.19610 1.20642 1.20692 1.71891 1.26242 1.12759 1.16472 0.91784 0.92251 0.92654 0.90644 0.90541 0.93574 0.91745 0.90527 0.91472 0.92375 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.24 37.16 0.38 -1.62 15 2 C 0.14 1.72 6.28 -4.04 -0.03 1.70 15 3 N -0.59 -9.61 2.98 -185.18 -0.55 -10.16 15 4 C 0.11 1.48 10.60 59.85 0.63 2.11 15 5 C 0.42 8.60 8.33 -321.18 -2.68 5.93 15 6 N -0.46 -9.97 11.55 28.63 0.33 -9.64 15 7 O 0.04 0.95 11.30 18.09 0.20 1.16 15 8 C 0.26 6.01 7.69 -13.00 -0.10 5.91 15 9 C 0.10 2.51 5.60 -29.04 -0.16 2.35 15 10 C -0.52 -14.21 9.09 -34.44 -0.31 -14.52 15 11 H 0.06 1.71 7.74 -52.49 -0.41 1.30 15 12 C 0.07 1.77 5.46 -17.82 -0.10 1.68 15 13 N -0.89 -24.89 13.29 55.43 0.74 -24.16 15 14 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 15 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 18 N -0.53 -12.18 10.96 -12.68 -0.14 -12.32 15 19 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 22 H 0.08 0.73 8.07 -51.93 -0.42 0.31 15 23 H 0.08 1.06 7.69 -51.93 -0.40 0.66 15 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 25 H 0.06 0.65 8.07 -51.93 -0.42 0.23 15 26 H 0.08 1.15 7.69 -51.93 -0.40 0.75 15 27 H 0.07 1.73 8.14 -51.93 -0.42 1.31 15 28 H 0.06 1.45 8.14 -51.93 -0.42 1.03 15 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 LS Contribution 260.64 15.07 3.93 3.93 Total: -1.00 -29.82 260.64 -6.59 -36.41 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -3.71 Total: -4.70 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.36 Total: 3.52 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.38 Total: -56.28 kcal Atomic # 8 Polarization: 0.95 SS G_CDS: 0.20 Total: 1.16 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.82 -6.59 -36.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233992911.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.737 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds